Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04344 ATGGATTGTGTTAATGTCAAGGTTGAGCCTGAGGAGTTTATGGTTCTTGAATCTTCTCCTGTTGTCGCTGTTGATGGTGTTAGTTCTAACATGGATGATGGGTCAATGATGAATTTCTCAGCAAACAAGTCGATAGCAGCATCGAGAATGAGCGAGGCATTTCCTAATACAAATCAGCTTACCATCTTCTATAACGGGAGCATTTGTATCTATAATGGAATTCCAGCAGAAAAGATGCAAGAAATAATGCTCATGGCTGCTGCTGCTGCCAAGTCTACGGAAACGAAGAATATCGTGAAACAATCTCCTGTTCCTTCACCTGTTCCCTCAAGGCCCTCTTCTCCACATGCCGCCACTGATAATATCGCTTCATCGCAGGCACTCTGCTTCCCTGCAAAGAAGAGTTCTGTCTGCAGGCTGCAAGAATTTCCAATAGCACGCAGACATTCACTTCAAAGGTTTCTTGAGAAGCGGCGAGACAGGTTGGGTAGTAAAGCACCTTATCCGTCTTCACCAAAAACAAAGATGGCTGACAACATAGAGAACAACTTCTGCTCTGAGAATTCGCCGGATTCGGTTTCATTGAAGGGGCCAAATGAAGAATTTCAGCCAACTATATCTGCCTCTTGA 630 0.4429 MDCVNVKVEPEEFMVLESSPVVAVDGVSSNMDDGSMMNFSANKSIAASRMSEAFPNTNQLTIFYNGSICIYNGIPAEKMQEIMLMAAAAAKSTETKNIVKQSPVPSPVPSRPSSPHAATDNIASSQALCFPAKKSSVCRLQEFPIARRHSLQRFLEKRRDRLGSKAPYPSSPKTKMADNIENNFCSENSPDSVSLKGPNEEFQPTISAS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04344 209 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 42 178 IPR040390 -
Vifa1g04344 209 MobiDBLite consensus disorder prediction 96 119 - -
Vifa1g04344 209 SMART tify_2 53 88 IPR010399 -
Vifa1g04344 209 MobiDBLite consensus disorder prediction 175 209 - -
Vifa1g04344 209 Pfam tify domain 55 87 IPR010399 -
Vifa1g04344 209 Pfam Jas motif 144 168 IPR018467 -
Vifa1g04344 209 MobiDBLite consensus disorder prediction 157 209 - -
Vifa1g04344 209 ProSiteProfiles Tify domain profile. 53 88 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04344 Vifa-Chr1 674787630 674789561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04344 58 171 Tify Gene Family AT5G20900 54.783 1.34e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa1g04344 tify 6.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04344 K13464 - gmx:100306045 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04197 4 1336637303 1336638816 Vifa1g04344 1 674787630 674789561 PCT