Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04332 ATGGAAACCGCAACCACCCTTACCGGTTTACTCCAATCCGTCGCCAAATCATTCCCCTCTCGACGAGCCATCTCCCTCGCCGGCAAATTCGACATCACTCATTCTCATCTCCACGAATTAGTCGAATCCGCCGCAGATCATCTCATCGCTTCCGGAATCAAACCGAACGACGTCGTCGCTCTCACTTTCGCCAACACCGTTGAGTATGTTATATTGTTTTTAGCTGTTATTCGAATCCGAGCCACAGCGGCTCCTTTGAATGCAGCTTACACTGCCGAAGAGTTTGAGTTTTATCTATCTGATTCCGAATCGAAGCTTCTATTAACGCCGTTAGAAGGTAACAAGCCGGCGCAAGAGGCAGCTTCAAAGCTCAAGATTCCTCTCGGCTCGGCTTCTCTCACAAAAACTGAAGAAGAAACCAAGCTTACAATCTCCCTGAACCATCCCGATTCAGGTTTAAAATCAGACTCAGGAAACTCGGTTGCCAAACTCATTAACGAATCATCCGACGTGGCGCTTTTCCTCCACACATCAGGCACCACGAGTCGTCCCAAGGGAGTTCCTCTGACTCAACACAACCTAGTTTCGTCTGTGAAAAACATCCAATCGGTTTACCGATTCACTGAGTCAGATTCAACCGTGATCGTGCTTCCACTTTTCCATGTTCATGGTTTAATCGCGGGGTTACTGAGTTCACTCGGTGCCGGGGCTGCGGTGGCGTTACCGGCGGCAGGGAGATTCTCAGCCTCAACGTTCTGGAAAGACATGATTCAATACAATGCAACATGGTACACAGCGGTACCTACCATACACCAGATCATACTAGATCGCCATCAAAATAACCCGGAACCGGAATACCCGAAACTCCGGTTTATTAGAAGCTGTAGCGCTTCATTGGCACCGGTTATTCTAAGTCGTTTAGAGGAATCGTTTGGTGCACCAGTTTTGGAGGCTTATGCTATGACAGAGGCTTCTCATTTGATGAGTTCGAATCCTTTGCCACAAGATGGGGCCCACAAAGCTGGGTCGGTTGGGAAACCCGTGGGTCAAGAAATGGCTATACTTGATGAGTCGGGTCGGGTTTTGGAGGCTGGGGTTAATGGTGAAGTTTGTATTAGAGGAGAAAATGTTACGAAAGGTTATAAGAATAATGAGGCTGCTAATACGGCGGCGTTTTTGTTTGGTTGGTTTCATACTGGGGATATTGGTTTCTTTGATTCTGATGGATATTTGCATCTTGTGGGTCGGATTAAAGAGCTCATTAACAGAGGAGGAGAGAAAATATCACCAATTGAAGTGGATGCTGTTCTTCTAACACATCCAGACATAGCTCAAGCCGTTGCTTTTGGAGTACCAGACGAGAAATATGGTGAAGAGATACATTGTGCAATCATACCAAGAGAAGGGTCAAAGATTGATGCTGAAGAGGTGCTAACATTTTGCAAGAAGAATCTCACAGCTTTTAAAGTCCCCAAAAAGGTTTTCCTTACTGATTCTTTGCCCAAGACAGCTACCGGCAAGATTTTGCGCCGTCTTGTAGCAGAACATTTTATTTCTAAAGCTTGA 1566 0.4623 METATTLTGLLQSVAKSFPSRRAISLAGKFDITHSHLHELVESAADHLIASGIKPNDVVALTFANTVEYVILFLAVIRIRATAAPLNAAYTAEEFEFYLSDSESKLLLTPLEGNKPAQEAASKLKIPLGSASLTKTEEETKLTISLNHPDSGLKSDSGNSVAKLINESSDVALFLHTSGTTSRPKGVPLTQHNLVSSVKNIQSVYRFTESDSTVIVLPLFHVHGLIAGLLSSLGAGAAVALPAAGRFSASTFWKDMIQYNATWYTAVPTIHQIILDRHQNNPEPEYPKLRFIRSCSASLAPVILSRLEESFGAPVLEAYAMTEASHLMSSNPLPQDGAHKAGSVGKPVGQEMAILDESGRVLEAGVNGEVCIRGENVTKGYKNNEAANTAAFLFGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLTHPDIAQAVAFGVPDEKYGEEIHCAIIPREGSKIDAEEVLTFCKKNLTAFKVPKKVFLTDSLPKTATGKILRRLVAEHFISKA 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04332 521 Pfam AMP-binding enzyme C-terminal domain 432 507 IPR025110 -
Vifa1g04332 521 ProSitePatterns Putative AMP-binding domain signature. 174 185 IPR020845 -
Vifa1g04332 521 FunFam Peroxisomal-coenzyme A synthetase 6 416 - -
Vifa1g04332 521 CDD FACL_fum10p_like 19 515 IPR045310 GO:0016874
Vifa1g04332 521 Gene3D - 417 519 IPR045851 -
Vifa1g04332 521 FunFam 4-coumarate--CoA ligase 2 419 520 - -
Vifa1g04332 521 Pfam AMP-binding enzyme 12 423 IPR000873 -
Vifa1g04332 521 SUPERFAMILY Acetyl-CoA synthetase-like 5 518 - -
Vifa1g04332 521 PANTHER ACYL-COA SYNTHETASE 5 517 - -
Vifa1g04332 521 Gene3D - 5 416 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04332 Vifa-Chr1 672516603 672519880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04332 25 511 Monolignol Biosynthesis Gene Families AT4G19010 28.916 1.22e-55 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04332 K22133 - gmx:100817853 801.201