Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04326 ATGGAAGAAAAAACTTCAACAAAGATATTTATGGAAGTTGATGAAAGACCATCATCATCTTATGAACATGGTAAAAATAGAGATTCAGAAAGCAAAACCTATGAACCCTCATCTCTTCATAACAACACTCCAGGATCTTCACTTTTATTAAGTTTGAGCCTTAATAACACAACACAACTTCCCCATGAAACTCAAGGAAAGTCCCAAATCCATATTGGGAGGCTTCGAGTGAAGCTTGAGGAAGAAAAGAAGGAGAATGAAAATTTAAAAGTTATGATAAATCTGGTCAACGAACGATGCATTGTTCTTCAGAATCGATTACTTCTGCATCAATTATCTTCACTGCCTCAAAATAATCACAACTTGCCGAATGGAAATATACAAGATGAGGAGAAACCAGTGTTCCCTACTAGACAGTTATTGAATATTGATGAACCTTCAGCTTCAGATTGTAGCAAAAGAGAAGGATTTGCTTCATTGGAAAACAATGAGAATATTAATATTGGAAGAAACTTTGCATATGAGTGCTTTAATAGTATTCATGAAGGTGAAATAATTAGCAAAAAAGAGGATCAAGTATATGAGGTTGAATGCAGGAGAGCTAGAGTGTCTATAAGGGCACGATCAGATTTTTCTTTGATGGTGGATGGGTGTCAATGGAGAAAATATGGACAAAAGACAGCCAAGGGAAACCCTTGTCCTAGAGCCTACTATCGTTGTAGTATGGGAACTTCATGCCCAGTTCGTAAGCAGGTGCAAAGGTGTTTCAAAGATGAAAGTGTTTTCATAACAACCTATGAAGGAAACCACAACCATCAACTTCCACCAGCTGCAAAACCAATTGCAAACCTAACATCATCAGCACTCAACACATTCCTTTCAAACTCAACCACAAATTTACAATATGGAAACACTATATCCAACACATTCCTCTTCTCTTCACCATTATCTCCACCAAACTCAAATGCTATAGCTACTTTATCTCCATCTCCAACATGTCCTACTATAACACTTGATTTTACACTCCCTCCAAGTAACTATTTGCAATTCAAAAACCACAAACAACCATCATTGTTTTCTTTTCCATTTCAAGGTTATAGTTACCCTCAATCATTTGAGGTGTTTCCAAATATGATAAACAATGAGAGAAAACTTGCTTTGGTTGATGTTGTGAGTGAAGCTATAGCAAAAGATCCTTCTCTCAAGGCAACATTGTTTGCCGCCATGTCATCATTCACAAATGAAGATCCTCTAAATATTAATATTCATAGCGAACTTAGTAAGAGTGCTTAG 1293 0.3643 MEEKTSTKIFMEVDERPSSSYEHGKNRDSESKTYEPSSLHNNTPGSSLLLSLSLNNTTQLPHETQGKSQIHIGRLRVKLEEEKKENENLKVMINLVNERCIVLQNRLLLHQLSSLPQNNHNLPNGNIQDEEKPVFPTRQLLNIDEPSASDCSKREGFASLENNENINIGRNFAYECFNSIHEGEIISKKEDQVYEVECRRARVSIRARSDFSLMVDGCQWRKYGQKTAKGNPCPRAYYRCSMGTSCPVRKQVQRCFKDESVFITTYEGNHNHQLPPAAKPIANLTSSALNTFLSNSTTNLQYGNTISNTFLFSSPLSPPNSNAIATLSPSPTCPTITLDFTLPPSNYLQFKNHKQPSLFSFPFQGYSYPQSFEVFPNMINNERKLALVDVVSEAIAKDPSLKATLFAAMSSFTNEDPLNINIHSELSKSA 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04326 430 Gene3D WRKY domain 199 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g04326 430 Pfam WRKY DNA -binding domain 216 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g04326 430 ProSiteProfiles WRKY domain profile. 209 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g04326 430 MobiDBLite consensus disorder prediction 1 47 - -
Vifa1g04326 430 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 63 414 IPR044810 GO:0003700
Vifa1g04326 430 Coils Coil 72 99 - -
Vifa1g04326 430 MobiDBLite consensus disorder prediction 1 34 - -
Vifa1g04326 430 SUPERFAMILY WRKY DNA-binding domain 208 275 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g04326 430 SMART WRKY_cls 214 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04326 Vifa-Chr1 670954008 670977272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04326 190 341 WRKY Transcription Factor Family AT4G04450 55.414 2.62e-53 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g04326 WRKY 9.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04326 - - cam:101498660 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04326 1 670954008 670977272 Vifa4g04171 4 1327101684 1327106803 PCT