Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04317 ATGGTGATAATAAACCAAGAGAGAAAGAAAGAACACAAAGGAATGCGATTAGGGAAATACGAATTGGGAAAAACACTTGGTGAAGGAAACTTCGGAAAAGTTAAGTTAGCAAGAAACACTGATTCGGAACGGTTTTATGCTGTTAAGATTCTCGAGAAGAATAAGATTGTCGATCTCAACAACACTGACCAGATAAAAAGAGAGATTTCAACGTTGAAGCTTTTGAAACATCCTAACGTTGTTCGGTTATACGAGGTCTTGGCTAGCAAAACCAAAATCTATATGGTACTTGAGTATGTGAATGGTGGAGAGTTATTTGACAAAATTGCATCAAAAGGTAAACTAACAGAAGCTCATGGTAGGAAGATGTTCCAACAATTGATTGATGGTGTGAGCTGCTGCCACAATAAAGGTGTCTTCCATAGAGATCTTAAGTTAGAAAATGTACTTGTGGATGCCAAAGGGAACATAAAGATAACTGATTTTAACCTCAGTGCTCTGCCACAACATTGTAGGGCAGATGGGTTGCTACATACAACTTGTGGAAGTCCAAATTATGTTGCTCCTGAGATTCTTGCCAATAAAGGCTACGACGGTGCGAAATCGGATATTTGGTCATGTGGTGTTATCTTATATGTAATTCTAACCGGATACCTTCCTTTCGACGACAGAAATCTCGCAGTTCTCTATCAAAAGATTTTCAAAGGAGATGTTCAAATACCGATATGGTTGTCACCTGGTGCTCAAAACATCATAAAGAGAATTCTTGATCCCAATCCCGAAACCAGAATAACAATGTCTATGATCAAAGAAGATGAATGGTTTAAACCGGGTTATAATGCTGCTAACCGAGACGACGAGGAAGATGATGTATACATTGGTGATGAAGCCTTTTCCATCCAAGAAGTGCCCAGTGAAGCAGACCTGACTAGTCCAAAATCGCCGAAGCTTATCAATGCATTTCAGTTGATAGGGATGTCTTCGTGTTTAGACCTCTCTGGCTTTTTTGAGAAAGAGGATGTGTCGGAGAGAAAGATACGTTTTACATCAAACCATTCACCGAAAGATTTGACGGAGAAGATTGAGGACATTGTCATAGAAATGGGTTTTAGTGTTCAGAAAAAAAATGGAAAATTGAAAGTGATACACGAGAATAAAGCGCTTAAAAGTCTAGGAAGCCTCTCAGTTGCAGCAGAGGTTTTGGAAATAGGTCCATCATTGTATGTAGTCGAACTACGGAAATCTTATGGAGATGCAACTGTATATAGACAATTATGCAAGAAGTTGTCAAATGACTTGGGTATAGCCAAGGCGGCACAGCTTGTGAGCTCAGAAATGATAAACATATATGAAGAAAATAAATTAGAAGTCAGATAA 1377 0.3871 MVIINQERKKEHKGMRLGKYELGKTLGEGNFGKVKLARNTDSERFYAVKILEKNKIVDLNNTDQIKREISTLKLLKHPNVVRLYEVLASKTKIYMVLEYVNGGELFDKIASKGKLTEAHGRKMFQQLIDGVSCCHNKGVFHRDLKLENVLVDAKGNIKITDFNLSALPQHCRADGLLHTTCGSPNYVAPEILANKGYDGAKSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGDVQIPIWLSPGAQNIIKRILDPNPETRITMSMIKEDEWFKPGYNAANRDDEEDDVYIGDEAFSIQEVPSEADLTSPKSPKLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSNHSPKDLTEKIEDIVIEMGFSVQKKNGKLKVIHENKALKSLGSLSVAAEVLEIGPSLYVVELRKSYGDATVYRQLCKKLSNDLGIAKAAQLVSSEMINIYEENKLEVR 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04317 458 SMART serkin_6 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04317 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Vifa1g04317 458 SUPERFAMILY Protein kinase-like (PK-like) 17 305 IPR011009 -
Vifa1g04317 458 Gene3D Kinase associated domain 1, KA1 318 435 - -
Vifa1g04317 458 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165
Vifa1g04317 458 FunFam Non-specific serine/threonine protein kinase 11 99 - -
Vifa1g04317 458 CDD CIPK_C 319 430 - -
Vifa1g04317 458 FunFam Non-specific serine/threonine protein kinase 13 315 - -
Vifa1g04317 458 Pfam Protein kinase domain 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04317 458 ProSiteProfiles Protein kinase domain profile. 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04317 458 Pfam NAF domain 315 374 IPR004041 GO:0007165
Vifa1g04317 458 Gene3D Transferase(Phosphotransferase) domain 1 11 317 - -
Vifa1g04317 458 FunFam Non-specific serine/threonine protein kinase 315 438 - -
Vifa1g04317 458 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vifa1g04317 458 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04317 Vifa-Chr1 669549055 669553865 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04317 83 440 CBL-interacting serine-threonine protein kinases AT3G17510 71.031 6.59e-173 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa1g04317 Pkinase 2.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04317 K07198 - gmx:100815660 711.449