Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04316 ATGGTGATAATAAACCAAGAGAGAAAGAAAGAACACAAAGGAATGCGATTAGGGAAATACGAATTGGGAAAAACACTTGGTGAAGGAAACTTCGGAAAAGTTAAGTTAGCAAGAAACACTGATTCGGAACGGTTTTATGCTGTTAAGATTCTCGAGAAGAATAAGATTGTCGATCTCAACAACACTGACCAGATAAAAAGAGAGATTTCAACGTTGAAGCTTTTGAAACATCCTAACGTTGTTCGGTTATACGAGGTCTTGGCTAGCAAAACCAAAATCTATATGGTACTTGAGTATGTGAATGGTGGAGAGTTATTTGACAAAATTGCATCAAAAGGTAAACTAACAGAAGCTCATGGTAGGAAGATGTTCCAACAATTGATTGATGGTGTGAGCTGCTGCCACAATAAAGGTGTCTTCCATAGAGATCTTAAGTTAGAAAATGTACTTGTGGATGCCAAAGGGAACATAAAGATAACTGATTTTAACCTCAGTGCTCTGCCACAACATTGTAGGGCAGATGGGTTGCTACATACAACTTGTGGAAGTCCAAATTATGTTGCTCCTGAGATTCTTGCCAATAAAGGCTACGACGGTGCGAAATCGGATATTTGGTCATGTGGTGTTATCTTATATGTAATTCTAACCGGATACCTTCCTTTCGACGACAGAAATCTCGCAGTTCTCTATCAAAAGATTTTCAAAGGAGATGTTCAAATACCGATATGGTTGTCACCTGGTGCTCAAAACATCATAAAGAGAATTCTTGATCCCAATCCCGAAACCAGAATAACAATGTCTATGATCAAAGAAGATGAATGGTTTAAACCGGGTTATAATGCTGCTAACCGAGACGACGAGGAAGATGATGTATACATTGGTGATGAAGCCTTTTCCATCCAAGAACCCAGTGAAGCAGACCTGACTAGTCCAAAATCGCCGAAGCTTATCAATGCATTTCAGTTGATAGGGATGTCTTCGTGTTTAGACCTCTCTGGCTTTTTTGAGAAAGAGGATGTGTCGGAGAGAAAGATACGTTTTACATCAAACCATTCACCGAAAGATTTGACGGAGAAGATTGAGGACATTGTCATAGAAATGGGTTTTAGTGTTCAGAAAAAAAATGGAAAATTGAAAGTGATACACGAGAATAAAGCGCTTAAAAGTCTAGGAAGCCTCTCAGTTGCAGCAGAGGTTTTGGAAATAGGTCCATCATTGTATGTAGTCGAACTACGGAAATCTTATGGAGATGCAACTGTATATAGACAATTATGCAAGAAGTTGTCAAATGACTTGGGTATAGCCAAGGCGGCACAGCTTGTGAGCTCAGAAATGATAAACATATATGAAGAAAATAAATTAGAAGTCAGATAA 1374 0.3865 MVIINQERKKEHKGMRLGKYELGKTLGEGNFGKVKLARNTDSERFYAVKILEKNKIVDLNNTDQIKREISTLKLLKHPNVVRLYEVLASKTKIYMVLEYVNGGELFDKIASKGKLTEAHGRKMFQQLIDGVSCCHNKGVFHRDLKLENVLVDAKGNIKITDFNLSALPQHCRADGLLHTTCGSPNYVAPEILANKGYDGAKSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGDVQIPIWLSPGAQNIIKRILDPNPETRITMSMIKEDEWFKPGYNAANRDDEEDDVYIGDEAFSIQEPSEADLTSPKSPKLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSNHSPKDLTEKIEDIVIEMGFSVQKKNGKLKVIHENKALKSLGSLSVAAEVLEIGPSLYVVELRKSYGDATVYRQLCKKLSNDLGIAKAAQLVSSEMINIYEENKLEVR 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04316 457 SMART serkin_6 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04316 457 SUPERFAMILY Protein kinase-like (PK-like) 17 292 IPR011009 -
Vifa1g04316 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Vifa1g04316 457 FunFam Non-specific serine/threonine protein kinase 13 314 - -
Vifa1g04316 457 FunFam Non-specific serine/threonine protein kinase 11 99 - -
Vifa1g04316 457 CDD CIPK_C 318 429 - -
Vifa1g04316 457 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Vifa1g04316 457 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 420 - -
Vifa1g04316 457 Pfam Protein kinase domain 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04316 457 Gene3D Transferase(Phosphotransferase) domain 1 11 316 - -
Vifa1g04316 457 ProSiteProfiles Protein kinase domain profile. 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04316 457 Gene3D Kinase associated domain 1, KA1 317 434 - -
Vifa1g04316 457 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vifa1g04316 457 Pfam NAF domain 314 373 IPR004041 GO:0007165
Vifa1g04316 457 FunFam Non-specific serine/threonine protein kinase 314 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04316 Vifa-Chr1 669549055 669553865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04316 83 439 CBL-interacting serine-threonine protein kinases AT3G17510 70.391 1.54e-172 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa1g04316 Pkinase 2.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04316 K07198 - gmx:100815660 706.827