Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04295 ATGGAATTTCATCAAGTAGAAAAAGTACCAAAACCAAATTTGAGAAAGGGATTATGGTCACCTGAAGAAGATAATAAGCTCAGAAATTATATCCTTAAATATGGTCATAGCTGCTGGAGTTCTGTTCCCATTAAGGCAGGTTTGCATAGGAATGGAAAGAGTTGCAGATTAAGGTGGATTAATTACCTAAGACCAGGATTAAAGAAAGGTGTTCTTAGCAAATATGAGGAAGACACAATTATGACCCTACACCACATGTTGGGCAACAAGTGGTCTCAAATAGCACAACAATTACCAGGAAGAACCGACAATGAAATAAAAAATTATTGGCATTCATATTTGAAAAAGAAAGTGCTCAAAACTAAGGAAATTGATCAAATTCAATATGCTAGCTCAAGTTCAAATACAATGGATTCTTTACCAACACAAAAAAATACAATTGAAGAACCTAATAATTTATTATTAGAAAACTCATTACCAAAACTTTTATTTGCTGAGTGGCTTTCATTGGATCATGTAAATTCAGATGATTATTTTATCTTGCAAAATGGCTATGATCAAACTTCAATTTTTCAAGAAAATGTTATGCAATTGCCACAAGGAAAGGTTGGTGAAGAAGAGTATCATAATGAGGTTTATTTTTCATCACAAGTTCAAATATCAAATCATGTGGATGAAAATGAATTGGTTCATTATATCAACAACAATGGAATGTATATGTGA 723 0.3195 MEFHQVEKVPKPNLRKGLWSPEEDNKLRNYILKYGHSCWSSVPIKAGLHRNGKSCRLRWINYLRPGLKKGVLSKYEEDTIMTLHHMLGNKWSQIAQQLPGRTDNEIKNYWHSYLKKKVLKTKEIDQIQYASSSSNTMDSLPTQKNTIEEPNNLLLENSLPKLLFAEWLSLDHVNSDDYFILQNGYDQTSIFQENVMQLPQGKVGEEEYHNEVYFSSQVQISNHVDENELVHYINNNGMYM 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04295 240 Pfam Myb-like DNA-binding domain 73 114 IPR001005 -
Vifa1g04295 240 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vifa1g04295 240 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vifa1g04295 240 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vifa1g04295 240 FunFam MYB transcription factor 71 140 - -
Vifa1g04295 240 FunFam MYB transcription factor 13 69 - -
Vifa1g04295 240 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Vifa1g04295 240 CDD SANT 76 114 IPR001005 -
Vifa1g04295 240 PANTHER MYB DOMAIN PROTEIN 55 9 151 - -
Vifa1g04295 240 Gene3D - 72 140 - -
Vifa1g04295 240 Gene3D - 13 69 - -
Vifa1g04295 240 SMART sant 15 65 IPR001005 -
Vifa1g04295 240 SMART sant 68 116 IPR001005 -
Vifa1g04295 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Vifa1g04295 240 CDD SANT 19 63 IPR001005 -
Vifa1g04295 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04295 Vifa-Chr1 667051251 667053423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04295 15 204 MYB Transcription Factor Family AT3G48920 49.749 2.12e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g04295 Myb_DNA-binding 5.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04295 K09422 - gmx:100803537 286.96