Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04294 ATGGGGGTTCGAAATTTATGGGACATTCTCGAATCTTGCAAGAAAACCGTTCCTCTTCACAATCTCCAGAACAAAAGGGTGTGTGTAGATCTATCGTGCTGGGTGGTTCAGCTTCATAAAGTGTCGCATGCTTGTTTGAAAGAGAGGGTTTTTCTTAGAGGACTCTTTCACCGTCTTAGAGCTCTCATTTCCCTCAATTGTACAGTAGTTTTCGTTTCAGATGGGTCAATACCTGCCATTAAATTGTCAACTTATAGGCGTCGCTTAAACAATGGAAAAGAGGTAGCTCAAAACGAAACTAACTCACAGAATGCGACATCTTTACGAAGAAATTTGGGGTCTGAGTTTTCATGTATGATTAAAGAGGCTAAAGCCTTGGGGATGGCTCTCGGCGTCTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCTCAGTGTGCTTTGTTGAACTCTGAATCATTATGCGATGGATGTTTCAGTTCAGATTCAGATATATTTCTCTTTGGTGCAAGGACAGTGTACAGGGAAATCTGCCTTGGAGATGGTGGATATGTTGTATGTTATGAGATGGCAGAGATTGAAAATAAACTTGGATTGGGACGGGATTCATTGATTGCTCTCTCTTTGCTTCTCGGCAGTGACTATCATCAAGGAGTTCATGGTTTAGGTCCGGAGTTAGCTTGTCAGATAGTAAAATCAATTGGGGAGAAAGATGTTCTAAAAAAATTTGCTTCTGAAGGACTTGGATGGGTGAAAAAAAGAAAAGGAGCTAAAAATAATATAGGAAAGGACGATACCATTTTACAAGTGATTGATGCTTATTTGAAGCCAAAATGCCACTCAGCTGATTCAGACTTTGTGCTCAAGGCTCATTCTCAGTATCCATTTCAACGTACTAAGCTCCATCATATATGTGCTGTATACTTCGAATGGCCTTCGGAGAGAACAGATGGATATATCCTTCCATGTATAGCCGAAAGGGATTTACGACGATTTGCCAATTTGCGATCAACTTCGTCTGAACTTGGGTTGAACCTTCCTTTACATGAGATCCCTGTGGAATGTCCCGTGTCAGAAATCATTAAGTGTCGAAAAGTGCAAGGGAGAGAGTGCTTTGAGGTTTCATGGAAAGACATGGATGGACTTGAGACATCCATAGTACCTGCAGATCTTATAGAAAGTGCATGTCCTGAGAAGATTTTGGAATTCGAGGAGAAAAAATTGCTGCGGAAGAAACAAAATGTTCAGAAAAGAAGACCTAAGAAAAAGGAAACCACGCCTTCTCTGGCCGAGCTTGATCTAAAACTGCAGAGCCTGTTGTTAGATAATAATTTGGAAGACAATACCGATCACAATGCTGGTGATGCCAGTGATTCTATCGAGAGGATATTAGAAGAAACAACTTCTATGGTTGATGCTGTTCTGAACACAGAAAAATCGACGCTGTCACATGATGATGATGACATAGAAAATATTGAATGGACTCAGAATATCAGCAATATATCAAGCATGACAAGCAATGATTCTATCGGGAGGATATTAGAAGAAACAACTTCTATGGTTGACGGTGTTCTAAACACCGAAAAATCGACGCTGTCACATGATGATGACATAGAAAACATTGGATGGACTCAGAATATCAGCAATATATCAAGCATGAAAAGCAATGAGTCTGTTTCTAGTACAGAAAAAAGTGTGGTCATAGATCTTTTGAGCCCTTCTCCATTTAAGCCATCAAATACTTCAAAATTTCATCCATCAAGTGACCAAAACATTGAAGTGATTAATTTGAGTGATTCAGAAAATGAGGTGTCACCTGAACACAAGCAGAAAGCTAAAGAGCTGAGATTGTTCTTAGCAAGTATTAGAAGTGAAATTCATTGA 1881 0.3966 MGVRNLWDILESCKKTVPLHNLQNKRVCVDLSCWVVQLHKVSHACLKERVFLRGLFHRLRALISLNCTVVFVSDGSIPAIKLSTYRRRLNNGKEVAQNETNSQNATSLRRNLGSEFSCMIKEAKALGMALGVSCLNGIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTVYREICLGDGGYVVCYEMAEIENKLGLGRDSLIALSLLLGSDYHQGVHGLGPELACQIVKSIGEKDVLKKFASEGLGWVKKRKGAKNNIGKDDTILQVIDAYLKPKCHSADSDFVLKAHSQYPFQRTKLHHICAVYFEWPSERTDGYILPCIAERDLRRFANLRSTSSELGLNLPLHEIPVECPVSEIIKCRKVQGRECFEVSWKDMDGLETSIVPADLIESACPEKILEFEEKKLLRKKQNVQKRRPKKKETTPSLAELDLKLQSLLLDNNLEDNTDHNAGDASDSIERILEETTSMVDAVLNTEKSTLSHDDDDIENIEWTQNISNISSMTSNDSIGRILEETTSMVDGVLNTEKSTLSHDDDIENIGWTQNISNISSMKSNESVSSTEKSVVIDLLSPSPFKPSNTSKFHPSSDQNIEVINLSDSENEVSPEHKQKAKELRLFLASIRSEIH 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04294 626 Gene3D - 353 416 - -
Vifa1g04294 626 SMART xpgn3 1 95 IPR006085 GO:0004518
Vifa1g04294 626 CDD CSD 356 407 - -
Vifa1g04294 626 FunFam Flap endonuclease GEN-like 1 198 255 - -
Vifa1g04294 626 Gene3D - 198 259 - -
Vifa1g04294 626 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 558 IPR006084 -
Vifa1g04294 626 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Vifa1g04294 626 Pfam XPG N-terminal domain 1 90 IPR006085 GO:0004518
Vifa1g04294 626 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 335 IPR036279 -
Vifa1g04294 626 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vifa1g04294 626 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Vifa1g04294 626 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Vifa1g04294 626 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 69 88 IPR006084 -
Vifa1g04294 626 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Vifa1g04294 626 Gene3D - 2 197 - -
Vifa1g04294 626 CDD PIN_GEN1 2 198 - -
Vifa1g04294 626 ProSiteProfiles Chromo and chromo shadow domain profile. 354 414 IPR000953 -
Vifa1g04294 626 SUPERFAMILY PIN domain-like 2 213 IPR029060 -
Vifa1g04294 626 SMART xpgineu 128 198 IPR006086 GO:0004518
Vifa1g04294 626 SUPERFAMILY Chromo domain-like 353 410 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04294 Vifa-Chr1 666336579 666341595 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04294 1 234 Core DNA Replication Machinery Family AT5G26680 25.391 3.23e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04294 K15338 - gmx:100806919 820.076