Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04292 ATGTCTAAGGAAGTGAGTGAAGAAGGTCACCAACCTCATCATCACAGTGGAAAAGACTATGTTGACCCACCACCAGCACCTCTTCTCGACTTCGCTAAACTCAAGCTCTGGTCCTTCTACAGAGCTCTCATCGTTGAGTTCATAGCAACTCTCCTCTTCCTCTATGTCACCGTCGCCACCGTCATTGGCCACAAGAAACAAACCGGACCCTGCGACGGTGTTGGCCTTCTCGGCATAGCATGGTCCTTCGGTGGCATGATATTCGTCCTCGTTTACTGCACCGCAGGTATCTCCGGTGGCCACATGAACCCTGCAGTCACATTCGGCCTCTTCTTAGCTCGTAAGGTTTCTCTTATAAGAGCTATTTTATACATTATCTCACAGTGCTTAGGTGCTATTTGTGGTGTTGGGTTGGTGAAGGCTTTCATGAAGCACCCTTACAACCACCTCGGCGGTGGTGCTAACTCTGTTGCTTCTGGTTATACCAAAGGCTCAGCACTTGGCGCTGAGATTATCGGAACTTTTGTGCTTGTTTACACTGTTTTCTCTGCTACTGACCCTAAGAGAAGCGCACGTGACTCTCATATTCCTGTTTTGGCTCCTTTGCCTATTGGTTTTGCTGTTTTCATGGTTCATCTCGCAACTCCCATTTCTCCGCCTTTGTTTCTATTCCCAAACAACATCTTCTATCAACAACTCACAGCTGAACAACCTCAACCCATTCTTACTCGTGCCACTGAACTCACCATTTCCTTTCAAGGCGACGTCTATGTTTTCCCTTCCGTTACGCCACAAAAGCTGTTCCGTGAAAAACGAAAAGACAGATGCTTTCAGAAGAAAATTCGCTACACTTGCCGGAAAGAGGTTGCTGAGAGGATGCAACGGAAGAATGGACAGTTTGCATCATTGAAGGAAGAGTACAATTCTCCTACTGAAAATCAGGATTCTAGCAGTGGTACACCTTGCCCAAAATCTACTGAGCGTAGATGTCAGCATTGTGAAACTGGTGAGAAGTCTACTCCAGTAATGCGTCGAGGACCGGCTGGTCCAAGATCTCTATGCAATTCTTGTGGGCTCATGTCTCTTGAATCTTCCTCAACAGCAACAACCACCACCATATCCGCCTTCCATGCTTTTGCGATTTGCTTAATTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1182 0.4679 MSKEVSEEGHQPHHHSGKDYVDPPPAPLLDFAKLKLWSFYRALIVEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWSFGGMIFVLVYCTAGISGGHMNPAVTFGLFLARKVSLIRAILYIISQCLGAICGVGLVKAFMKHPYNHLGGGANSVASGYTKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATPISPPLFLFPNNIFYQQLTAEQPQPILTRATELTISFQGDVYVFPSVTPQKLFREKRKDRCFQKKIRYTCRKEVAERMQRKNGQFASLKEEYNSPTENQDSSSGTPCPKSTERRCQHCETGEKSTPVMRRGPAGPRSLCNSCGLMSLESSSTATTTTISAFHAFAICLISFGTKLACE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04292 393 Coils Coil 286 306 - -
Vifa1g04292 393 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g04292 393 Gene3D Glycerol uptake facilitator protein. 26 220 IPR023271 -
Vifa1g04292 393 ProSitePatterns MIP family signature. 101 109 IPR022357 -
Vifa1g04292 393 Pfam CCT motif 268 302 IPR010402 GO:0005515
Vifa1g04292 393 CDD ZnF_GATA 329 360 IPR000679 GO:0006355|GO:0043565
Vifa1g04292 393 Gene3D - 323 373 IPR013088 GO:0006355|GO:0008270
Vifa1g04292 393 SMART GATA_3 324 370 IPR000679 GO:0006355|GO:0043565
Vifa1g04292 393 Pfam Major intrinsic protein 34 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g04292 393 CDD MIP 41 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g04292 393 Pfam GATA zinc finger 330 360 IPR000679 GO:0006355|GO:0043565
Vifa1g04292 393 SUPERFAMILY Aquaporin-like 34 215 IPR023271 -
Vifa1g04292 393 ProSitePatterns GATA-type zinc finger domain. 330 357 IPR000679 GO:0006355|GO:0043565
Vifa1g04292 393 MobiDBLite consensus disorder prediction 301 325 - -
Vifa1g04292 393 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g04292 393 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 215 IPR034294 -
Vifa1g04292 393 MobiDBLite consensus disorder prediction 300 328 - -
Vifa1g04292 393 ProSiteProfiles CCT domain profile. 261 303 IPR010402 GO:0005515
Vifa1g04292 393 PRINTS Major intrinsic protein family signature 120 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g04292 393 PRINTS Major intrinsic protein family signature 83 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g04292 393 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g04292 393 PRINTS Major intrinsic protein family signature 205 227 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g04292 393 PRINTS Major intrinsic protein family signature 169 187 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g04292 393 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 325 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04292 Vifa-Chr1 665867144 665868563 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04292 1 242 Major Intrinsic Protein MIP AT4G35100 80.162 1.05e-136 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa1g04292 MIP 1.8e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04292 K09872 - thj:104804325 390.578