Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04286 ATGGTTATGTTTATGTTTCATCTCAACACATCTCTAATCCCCTTCCTCCTCCTTCTCTTCCTCAACCATGTCCAATCACAAACATCCATGCAACCTCTTCCCACAGACATCTCTCATCACAAATGGGAACCCTCCTTTGCAATCACAGTTGGTGCCATACTTTGTCTACTTCTCTTCCTAGGAATCGTCTTTTTTTACATCAGAAACTGCGTTGAATCACACATCATCATCACAAGAACAAACCACACCACTGATTGTCCTTGCTCATGTTCTCATGGTATCAGCCAAGAACTCCTCAACACTTTCCCTATCCTCTTTTACTCAGCTATCAAGGATGTTAAAACTGATAAAGGCCCATTGGAATGTGCTGTTTGTTTAACAGATTTCAAAGAAAATGATACTTTAAGATTACTACCTAAATGCAACCATGTTTTTCACCCTCAATGCATTGATTCATGGCTAGCTTCGCATGTTACATGTCCTGTCTGTCGCGCAAATCTTAACCAAGATTCTTGTCAGGTTTCTATCCCAATTATCATCCCAACCCATTTCAACAATGACTTCAACAATGACCATATGTGTGAGGAAAATTCTCAACCCGAAACAGAAACTCAAACCGAACCCGAAATCAGTCTCAATAATCCTTCCAATGACCAAAACCAAAACCCAAACCAAATCGGAGAAAGTCTCAATTGTGGTGACAATCATGCATCAAAACCGAAGCTTTTGAGGTCAAATTCAACTGGTCATTCTCTGGATGAACAAGTGAAGTGTGAGGAGAAGTACACACTGATGTTACCAGAGGATGTAAGGAGGTACATTTTGGTTAACCATGGAAAAAGCTGTCAGCTTTCTGTGAACGGTGAGGCGAAGGTTGAGAATGACAAGTGGGTTTGGTGTGCACGACGTGGTTGA 915 0.412 MVMFMFHLNTSLIPFLLLLFLNHVQSQTSMQPLPTDISHHKWEPSFAITVGAILCLLLFLGIVFFYIRNCVESHIIITRTNHTTDCPCSCSHGISQELLNTFPILFYSAIKDVKTDKGPLECAVCLTDFKENDTLRLLPKCNHVFHPQCIDSWLASHVTCPVCRANLNQDSCQVSIPIIIPTHFNNDFNNDHMCEENSQPETETQTEPEISLNNPSNDQNQNPNQIGESLNCGDNHASKPKLLRSNSTGHSLDEQVKCEEKYTLMLPEDVRRYILVNHGKSCQLSVNGEAKVENDKWVWCARRG 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04286 304 SMART ring_2 122 163 IPR001841 -
Vifa1g04286 304 MobiDBLite consensus disorder prediction 190 231 - -
Vifa1g04286 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 173 IPR013083 -
Vifa1g04286 304 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Vifa1g04286 304 SUPERFAMILY RING/U-box 116 172 - -
Vifa1g04286 304 CDD RING-H2_EL5-like 121 164 - -
Vifa1g04286 304 PANTHER RING FINGER DOMAIN-CONTAINING 36 167 - -
Vifa1g04286 304 Pfam Ring finger domain 121 164 IPR001841 -
Vifa1g04286 304 FunFam E3 ubiquitin-protein ligase ATL6 83 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04286 Vifa-Chr1 664315013 664315927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04286 10 275 Rapid Response to Elicitors AT3G05200 32.727 3.78e-47 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04286 K10664 - gmx:100782532 280.026