Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04284 ATGGATGCTAAATTTGAGGGGGAAAATCAGTTTTTGTATGAACCAGTAGTGCCAGAGATGAAGGGTGGTGGTGTTGGAAGTGGGAGTTCAAAGTGGGATTTGAATGATTGGAGATGGGATGGTGATCTTTTTACTGCTAAGCAACTTAATTCAGTGCCAACAGATTGTAGGAATCGTCAACTTTTCCCGGTTGACCCCGAAAATGTTGATGTTTCGAACAATTTGGTTTCTGGTGAAGGAAGTAGAGAATTGGAGAAGAGAAGGAGGGGTTTTTATGATGAAGGGTTGGAGATGAATGGTGATTTTGGTTCGCTTAATTTGAATCTTGGGGGTCAAGTTTACCCGATTATGGAAGGGGAGGAAAAAAGTGGTAAGAAAACGAAGATTACCGTGACTACTTCGAATCGGGCTGTTTGTCAGGTGGAAGATTGTAGGGCGGATCTTAGTAACTCAAAGGATTACCATCGTCGCCATAAAGTTTGTGATGTGCATTCTAAGGCTAGTAAAGCGCTGGTGGGAAATGTTATGCAGCGGTTTTGTCAGCAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGCCGTAGGCGTCTTGCAGGTCACAATAAGAGGAGGAGGAAGACACATCCGGATGCGGCTGTAGTTAACGGAGGCTCTCCGAATGAAGAAAGGGGCAGTAGCTATCTATTGACGAGTGTGCTGAGGATACTGTCCAATATGCATTCAAACGACGCAGATCACATGGGAAACTCAGATGTTCTTTCTCGTCTACTTGGGAACCTCACAAGTTTAACTGGTGCAGTAAACGGAAGGAATATAGCATCATTGTTGGAGGGATCTCAAGATTTAGTAAAGGCCGGTACATCTGGAGCTGCACAGAATGTTCCAAACACCAATTCAATCGGTTCCGAACCACCAAGACCTTCCGACTCTTCCCTCAAAATGAATAACAATCTAATCCATCAGGACCCTCCGGAAACTAGGTTACAGTGTGCGACAGTTCCTTCAAATCATATGACTCAAAAATGTATACCTTCAAGCAGTGTTGGAGTAGGATGTTTAAAATCTCCTTTGGAACCACAACCCAAAGATGTGCTTCCTTCACAGGGTAGCCTTCCGCCTCGACCAGTTGCCGTAGAGACTACAGCTGGAAGAAATGGTTTAATCAATATTGACCTGAATAATGTATATGACGACGTGCAGGATCATGTTGAGAACCCTGAAAATTCTCGTCCTCATGTAGCTTCTTGGGTTGGATCTCATGATCATCCTTCATTTGTACAATATGAATCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCCACACAGTCACCATCTAGTTCTAGCGGAGAAGGCCAGAGTCGAACAGATCGAATTGTTTTCAAACTCTTTGGCAAGGATCCTAATGATTTCCCCGTTGTTCTTCGATCACAGATCCTTAGCTGGTTATCCCACAGTCCCACAGAAATAGAGAGCTATATAAGGCCGGGATGTATTATTTTAACTATACGTCTCCGCCTAGAAAATTCTGCATGGGATGAGCTATGCTATAATCTCGGATCTAGCTTGCGAAAGCTTCTAGCTGTATCGAATGATTCACTTTGGAGAACAGGGTTGATATATACAAGAGTCCGGAACTCTGTAGCTATTCTGTATAATGCTCAGGTGGTCATGGATGCGCCATTGCGTCTTGGAAGCCCAGAAAGTTGTCAGATTTTGTGCGTTAAGCCCCTTGCTGTTTCTGCAAGTGCAGACGTAAAATTTTCTGTGAAAGGATTAAACCTTTTCCTGTCTAGTGCAAGGTTACTCTGCGCACTTGAAGGAAAATATCTGGTAGAGAATAGGTGTTGTGATTTGATTGACGGTGCTGATGCAGCCACTGGACATCACGAGCTTCAGAATCTCAGCTTCTCCTGTCATATACCAAATATGTCTGGAAGAGGGTTTATTGAGGTTGAAGATGATAGTCTCAGCAGCTGTTCCTTTCCATTCATAGTTGCGGAGCCTGAAATTTGTTCCGAGATATGTAATCTGGAAACTGTCATTGAAGCAGCCGAGACTGCTGATGACATCCAGATAAAAGCTAAATTAATGGAAGAAAAGACTCGAGCAATGAATTTCATACAAGAAATGGGTTGGCTCCTTCATAGAATTCGTGTGAAATATAGGCTAGGGCCAGCGAAACCTGTTCAAGATCGCTTTCACTTTAATCGGTACACATGGCTTGTTGGCTTCTCAATGGATCATGATTGGTGTGCTGTGATGAAAAAACTCTTGGACATTATCTTTGAAGGTGAAGTTGATACCGGAGAACATATCTCTGCCGAGCGTGCGTTGTTAAACATGGGTCTTCTCCACAAAGCTGTAAAGAGAAATTGCAGGCCTATGGTGGAACTACTTTTAAACTTTGCGCCAATTAAGGCGTCAGATGGAGACAGTAAAGAGATGCAAGTCAATAAGTCCCCCGACAGATTCTTGTTTAGACCCGATGTTGTTGGGCCTGCTGGATTGACACCCCTTCATGTTTCCGCAAGTATGAATGGTTATGAGACTGTATTGGATGCGTTAACTGACGATCCGGGAATGGTTGGAATTGAAGCATGGAAAAGTGCCAAAGACAATACAGGTTTAACACCCAATGACTATGCATCACTTAAGGGCCACTACTCCTACATTCAACTTGTGCAGAGAAAAACAAGCAAGAACAACCAAACTCAACATGTGCTCGACATCCCAGACACCCTTGTAGACGGAAACTCGAAGAAGCAATTAGATGGACATAAATCATCCAAAGTTTCAAGTTTCAATACAGAAAATATTGCAACAATGGCAAATCATTGTGGGCTTTGCCAACAGAAACTGGCCTACAGCGGCAATGGCGGCATGAGGAGGGCACTTGTCTATAGGCCGGCGATGCTGTCAATGGTCGCGATTGCAGCTGTATGTGTTTGTGTGGCCTTACTCTTCAAAAGCTCCCCAAGAGTTTACTATGTCTTCCAGCCTTTCAGCTGGGAATCTTTGGAGTATGGTTCAATGTAA 3072 0.4362 MDAKFEGENQFLYEPVVPEMKGGGVGSGSSKWDLNDWRWDGDLFTAKQLNSVPTDCRNRQLFPVDPENVDVSNNLVSGEGSRELEKRRRGFYDEGLEMNGDFGSLNLNLGGQVYPIMEGEEKSGKKTKITVTTSNRAVCQVEDCRADLSNSKDYHRRHKVCDVHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDAAVVNGGSPNEERGSSYLLTSVLRILSNMHSNDADHMGNSDVLSRLLGNLTSLTGAVNGRNIASLLEGSQDLVKAGTSGAAQNVPNTNSIGSEPPRPSDSSLKMNNNLIHQDPPETRLQCATVPSNHMTQKCIPSSSVGVGCLKSPLEPQPKDVLPSQGSLPPRPVAVETTAGRNGLINIDLNNVYDDVQDHVENPENSRPHVASWVGSHDHPSFVQYESLKSSPPQTSRNSDSTSTQSPSSSSGEGQSRTDRIVFKLFGKDPNDFPVVLRSQILSWLSHSPTEIESYIRPGCIILTIRLRLENSAWDELCYNLGSSLRKLLAVSNDSLWRTGLIYTRVRNSVAILYNAQVVMDAPLRLGSPESCQILCVKPLAVSASADVKFSVKGLNLFLSSARLLCALEGKYLVENRCCDLIDGADAATGHHELQNLSFSCHIPNMSGRGFIEVEDDSLSSCSFPFIVAEPEICSEICNLETVIEAAETADDIQIKAKLMEEKTRAMNFIQEMGWLLHRIRVKYRLGPAKPVQDRFHFNRYTWLVGFSMDHDWCAVMKKLLDIIFEGEVDTGEHISAERALLNMGLLHKAVKRNCRPMVELLLNFAPIKASDGDSKEMQVNKSPDRFLFRPDVVGPAGLTPLHVSASMNGYETVLDALTDDPGMVGIEAWKSAKDNTGLTPNDYASLKGHYSYIQLVQRKTSKNNQTQHVLDIPDTLVDGNSKKQLDGHKSSKVSSFNTENIATMANHCGLCQQKLAYSGNGGMRRALVYRPAMLSMVAIAAVCVCVALLFKSSPRVYYVFQPFSWESLEYGSM 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04284 1023 FunFam Squamosa promoter-binding-like protein 14 130 200 - -
Vifa1g04284 1023 MobiDBLite consensus disorder prediction 433 465 - -
Vifa1g04284 1023 ProSiteProfiles Zinc finger SBP-type profile. 136 213 IPR004333 GO:0003677
Vifa1g04284 1023 SUPERFAMILY SBT domain 137 218 IPR036893 GO:0003677|GO:0005634
Vifa1g04284 1023 Pfam SBP domain 139 212 IPR004333 GO:0003677
Vifa1g04284 1023 Gene3D - 775 927 IPR036770 -
Vifa1g04284 1023 MobiDBLite consensus disorder prediction 293 319 - -
Vifa1g04284 1023 SUPERFAMILY Ankyrin repeat 792 905 IPR036770 -
Vifa1g04284 1023 Gene3D - 130 200 IPR036893 GO:0003677|GO:0005634
Vifa1g04284 1023 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 90 843 IPR044817 GO:0003677
Vifa1g04284 1023 MobiDBLite consensus disorder prediction 203 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04284 Vifa-Chr1 664097019 664103031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04284 1 1022 SBP-box Gene Family AT3G60030 45.990 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa1g04284 SBP 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04284 - - gmx:100792774 1526.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04284 1 664097019 664103031 Vifa1g04284 1 664097019 664103031 ECH