Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04279 ATGTCGAAGAACACTTCCTTTCAAGACGACGTGCCATGGCGAGTTTCATCATCTTCACTGAAACCATTACCCAAAATTCACCACTCTCCTATTCTTCGCGTTTCTCACACACCTCTCTCCGATTATGCAATTTCCATCATGAGGCATCCAGACCCTATAGGGAATGGTTTGGGTGATGGAGCTATAGTGGAAGCAGCTGGTCCTGAATGCTTAGTACCTGGTCAAAGTGCTCCCATTAAACTACTTGGTCTCAAGGTCTGGCCTATAGAAGTTGACTTGAAATTTTTGGAACCCGTCGGGCGAGAACTTAAGGCGCTTGGGAAGTTCTTTCTATTTGGATTTACTTTTACAGCAACAATTTTCGTTGTTTCCCTTGTCACTCTTGGAGTTTTACTTATTACTTTGCTGGTTTCTTTGGTGATTATGCTGCAATCATGTCAAAGTAAAAGTACTGGAGTTATTGAACTTGTGAATATGAATAATTACTACAGTTATTGCAGGGTGTATTCTCTGCATGCTGAGATCAATAGGTTAGAGAGATATGATCTTCCAAACATATGTAGAGATCTGACTATACATTATATCAAAGGAGGGCATTATGCCAAAGAGTTGAATTTAATTGTGTCTATGATCGATGATTACTTCAAGAATCTGAGACCTTCAGACAATGGTTTGGATGTGGTGTTGTTGGATATAGATGATATTGTTCCTCCAAATTCGTATCAGAGGTTTCATAGGGACGGCATTAGCAACTGTGTCAAAGAGGCAAAACATGTAAAGCTCATGTTTGTTTTAAGGTTATACATGAACCTTCAAACTGATGGGTGGCCTATAATTTTGGTATCAAGAGAACCTGAAACGTACCAAAATGTCACCATTAATCATCTTGTTTCTGCAGGATTTAGAGGTTGGTCTTCCTTGATGATGAGAACAGAAGATTCAGAGTCTACTAAAGGAAATGAGTACTTTTCTAGACGTCTGCTTTCGTATCCATCAGGTCATTTCTTCCCTGCAGCTGATCAGGTCGGGCAAGTTAAGTGTGGGAGTTGTACGCTATTGCTAATGTATCCATATGGCGCTTCACAGGTCAGGTGTTCATCATGCCGGTTTGTGACAGAAATCGGGGTGGTAGTGTGTGTACCTTCATCAAGGAGTTATGCATCAAGTCAGCTAACATATCAGAGGTTATATTCCTAG 1197 0.406 MSKNTSFQDDVPWRVSSSSLKPLPKIHHSPILRVSHTPLSDYAISIMRHPDPIGNGLGDGAIVEAAGPECLVPGQSAPIKLLGLKVWPIEVDLKFLEPVGRELKALGKFFLFGFTFTATIFVVSLVTLGVLLITLLVSLVIMLQSCQSKSTGVIELVNMNNYYSYCRVYSLHAEINRLERYDLPNICRDLTIHYIKGGHYAKELNLIVSMIDDYFKNLRPSDNGLDVVLLDIDDIVPPNSYQRFHRDGISNCVKEAKHVKLMFVLRLYMNLQTDGWPIILVSREPETYQNVTINHLVSAGFRGWSSLMMRTEDSESTKGNEYFSRRLLSYPSGHFFPAADQVGQVKCGSCTLLLMYPYGASQVRCSSCRFVTEIGVVVCVPSSRSYASSQLTYQRLYS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04279 398 Pfam LSD1 zinc finger 347 371 IPR005735 -
Vifa1g04279 398 Gene3D - 161 329 IPR023214 -
Vifa1g04279 398 NCBIfam zinc finger domain, LSD1 subclass 344 372 IPR005735 -
Vifa1g04279 398 Pfam HAD superfamily, subfamily IIIB (Acid phosphatase) 158 317 IPR005519 -
Vifa1g04279 398 PANTHER EXPRESSED PROTEIN 4 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04279 Vifa-Chr1 663131602 663135859 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vifa1g04279 Acid_phosphat_B 2.3e-11 CL0137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04279 - - gmx:100798657 289.271