Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04277 ATGGTTCCGCCTCCACCACCGGTGGATAACGGCGAATCCACCACAGCTGTTACAATTACAACCCCCGCTGTAGAATCTCAGAGATCTATTCCGAAGCCGTTTCTCACCAAAACCTATAACCTAGTTGAGGATAAATCCATCGACGACGTTATTTCATGGAACGAAGATGGATCCACCTTCATCGTTTGGAACCCTACCGTTTTCGCTAGTAATTTGCTTCCAAAATATTTCAAACACAATAATTTCTCAAGCTTCGTTCGTCAACTCAATACTTATGGATTTAGAAAAGTAGTACCTGATCGCTGGGAATTCTCTAATGATTGCTTTCGAAGAGGAGAGAGACGGCTTCTAAGCGAGATTCAACGCCGGAAAATCTGTTCTGCGGTCACGACGTCTGTTTCTGCTGTTACGGCGGCGGTGGAAACCGCGACGGTAGCCGTTCCTTCACCTATGCCGCTGACTGTAATACCTATGGCGATGCCGATAGTTTCGCCATCAAACTCGGGTGAAGAACAGGTGATATCATCGAGTTCGTCTCCGACTCGAGCGCCATCAGAGCTTCTTGACGAGAACGAGAGATTGAGAAAAGAGAATGTTATCCTGAACAAGGAACTTGCTGAGATGAGATTGCTTTGCAACAATATATACACTCTCATGTCAAGTTATGGAAACAACAACAACAATAGCAATAACAGCAGCAGTAATAATAATAATAATAATAATCAAACGGACGGTGGCGCGCAAGGAAGCAGAGAGTCCGGTATGACGGCGGCGAAGCCGTTGGATTTGATGCCGGCGGTGAAACGGAGCTCCGGGATGGAAGAGATGAATCCGAAGCTGTTTGGTGTTGCTATTGGAACGAAGCGAGCGAGAGAAAACGGTTGTGAAAGTGGAAGAGATGATACACTATTGCGGCTACATCAACCAGGTTCTATGGACGTGAAATCAGAGCCGTTGGATTGTCAGGATAGTGATCAAACGCCGTGGTTGAACCGGTGTAGTAGAGGGAATGAGAGTTTATGTAAATGA 1029 0.4606 MVPPPPPVDNGESTTAVTITTPAVESQRSIPKPFLTKTYNLVEDKSIDDVISWNEDGSTFIVWNPTVFASNLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFRRGERRLLSEIQRRKICSAVTTSVSAVTAAVETATVAVPSPMPLTVIPMAMPIVSPSNSGEEQVISSSSSPTRAPSELLDENERLRKENVILNKELAEMRLLCNNIYTLMSSYGNNNNNSNNSSSNNNNNNNQTDGGAQGSRESGMTAAKPLDLMPAVKRSSGMEEMNPKLFGVAIGTKRARENGCESGRDDTLLRLHQPGSMDVKSEPLDCQDSDQTPWLNRCSRGNESLCK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04277 342 ProSitePatterns HSF-type DNA-binding domain signature. 73 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g04277 342 MobiDBLite consensus disorder prediction 166 185 - -
Vifa1g04277 342 FunFam Heat stress transcription factor B-4 26 124 - -
Vifa1g04277 342 SUPERFAMILY "Winged helix" DNA-binding domain 31 123 IPR036390 -
Vifa1g04277 342 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 28 253 IPR027725 -
Vifa1g04277 342 MobiDBLite consensus disorder prediction 226 250 - -
Vifa1g04277 342 Coils Coil 191 211 - -
Vifa1g04277 342 MobiDBLite consensus disorder prediction 166 190 - -
Vifa1g04277 342 Pfam HSF-type DNA-binding 34 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g04277 342 PRINTS Heat shock factor (HSF) domain signature 34 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g04277 342 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g04277 342 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g04277 342 MobiDBLite consensus disorder prediction 226 258 - -
Vifa1g04277 342 Gene3D - 26 124 IPR036388 -
Vifa1g04277 342 SMART hsfneu3 30 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04277 Vifa-Chr1 662862808 662863935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04277 6 341 HSF AT5G62020 45.682 8.16e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa1g04277 HSF_DNA-bind 4.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04277 K09419 - gmx:100812267 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04277 1 662862808 662863935 Vifa1g04277 1 662862808 662863935 ECH
Vifa1g04277 1 662862808 662863935 Vifa3g02959 3 833110772 833111718 PCT