LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g04273	ATGGAAAAACATCATTTGACACATTTTGTGTTGTTTAGTTTAATAATTCTTGTCCCTTGTTTGTGCCTACAAGATGTTCTGGATAATGCTACTACTTCTGTCTATGTTGTTACTTTAAAACAAGCTCCAACTTCTCATTCTTATGGTGTTTTGACAAGGTTGAATGATGGTAATAATAATGGGTTCAAAGATAATGGAAGAACTCAATTTCAGAAACCAAGATATGGCAATATTACAAAGACAGATAAGAGATATGGCTCTTATGTTACGCGCGAGCACGATTCTTTGTTGAAGAAAGTGTTGAAAGGAGAGAAATATCTGAAACTCTATAGCTACCATTACCTGATTAATGGATTTGCTGTGCTTGTTACCCAACAGCAGGCAGAGAGACTATCAAGGAGCAATGAAGTGTCTAATGTGGTTTTGGATTTTTCTATTAGAACAGCAACTACACATACTCCACAATTTTTGGGTCTGCCACAAGGAGCATGGTCTCAAAATGGTGGTTTTGATACGGCTGGAGAAGGAGTTGTTATTGGGTTTGTTGACACTGGAATAGATCCATCGCACCCTAGTTTTGGCGATAATATATCTCAACAACACCCATATCCTGTTCCTGCTCATTTTTCTGGTATCTGCGAGGTTACTCGAGATTTTCCTTCTGGCTCTTGCAATAGGAAACTTGTTGGGGCACGTCATTTTGCAGCATCTGCAATAACAAGAGGAATATTTAACTTGACTCAAGACTATGCATCTCCCTTTGATGGCGATGGCCATGGCACGCATACTGCATCGGTTGCAGCAGGAAACCATGGGATTCCGGTGATTGTTGCTGGACATCACTTTGGCAATGCTAGTGGGATGGCTCCTCGTTCGCACATTGCGGTGTACAAGGCGTTATACAAGAGCTTTGGAGGATTTGCTGCAGATGTTGTTGCAGCAATTGACCAGGCAGCTCAAGATGGTGTTGACATAATTAGTTTATCTATCACTCCAAATAGGCGTCCTCCGGGTGTTGCAACTTTCTTCAATCCTATAGACATGGCGTTACTGTCAGCTGTAAAGGCCGGTATTTTTGTGGTTCAAGCTGCTGGAAATACCGGGCCATCACCAATGAGCATGTCTTCTTTCAGTCCATGGATCCTTACTGTTGGTGCTGCCTCTCATGATCGGCTTTATAGTAACTCTATAATTCTCGGAAACAATGTTACCATACTGGGAGTTGGACTTGCACCTGGCACGGACGAAAACAAACTTTACAAACTGATTCACGCGCATGATGCTTTGAACAATGACACAACGGTCGCTGATGACATCTATTCAATTCGATTTGTGCTCGGCATTTCCACCATCAAACGAGCGTCAGAAACAGCCAAGAACCATAGTGCAGCTGGTGTTGTCTTCTATATGGATCCTTACGTGATCGGTTTTCAGCTTAACCCAGTGGCAATGAAAACGCCTGGCATAATAATTCCATCTACAAATGACTCAAAGATTTTGATGCAATACTACAATTCTTCGTTGGAAATAGACGTGGTTTCGAAGAAAGTTGTTAAATTTGGGGCAGTTGCTGCAATCTGTGGTGGACTAAAAGCAAACTACAGTGCTGCTTCCCCAAAGGTTATGTATTACTCTGCCAGAGGCCCAGATCCAGAGGACAGTCTTCCTCGCCAAGCCGACATTTTGAAACCTAACTTGTTAGCTCCCGGAAACTTTATATGGGCAGCTTGGAGTTCTCTTGGAACTGACTCGGTTGAATTTCAAGGGGAGAATTTTGCAATGATGTCTGGCACAAGTATGGCTGCACCACATATTGCAGGTCTTGCTGCGCTGATTAAGCAAAAGTTTCCGAATTTCAGTCCTGCAGCTATCAGTTCGGCCCTTTCTACTACTGCTTCTCAGAATGATAAGAGCGGCGGGCCGATTATGGCTCAACGATCATACGCCTTTCCAGATCTGAGCCAAACTTCGGCTACTCCTTTTGACATGGGAAGCGGTTTTGTGAATGCAACTGGAGCATTGAATCCCGGTTTGATTCTCGATACCAGTTACGATGATTACATGTCATTTTTATGTGGCATCAATGGTTCAGCTCCGGTGGTACTAAACTTCACCGGTCAAAATTGTTTGCTTTATAACTCAACTCTTCAGGGTCCTGATCTAAACTTGCCTTCAATCACTTTATCAAAGCTAAACCAGTCCACAGTTGTACGGAGAACAGTTCAAAACATTGCTGGAAATAATGAAACTTACAGTGTTGGTTGGACCGCTCCTTTCGGTGTTTCGGTGAAAGTAACTCCAACTCACTTTTCTATTGCCAACGGCGAAAAACAAGTCTTATCCGTGATCTTGAACGCAACCGCGAATAATTCTGTTGCGAGCTTTGGGAAGATTGGACTGTTTGGTAATCAAGGTCATACTGTCAACATTCCGATTTCGGTTATTTTTAAAATCTCATATAGTAACATCACTACTAGCTAA	2481	0.4252	MEKHHLTHFVLFSLIILVPCLCLQDVLDNATTSVYVVTLKQAPTSHSYGVLTRLNDGNNNGFKDNGRTQFQKPRYGNITKTDKRYGSYVTREHDSLLKKVLKGEKYLKLYSYHYLINGFAVLVTQQQAERLSRSNEVSNVVLDFSIRTATTHTPQFLGLPQGAWSQNGGFDTAGEGVVIGFVDTGIDPSHPSFGDNISQQHPYPVPAHFSGICEVTRDFPSGSCNRKLVGARHFAASAITRGIFNLTQDYASPFDGDGHGTHTASVAAGNHGIPVIVAGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGVATFFNPIDMALLSAVKAGIFVVQAAGNTGPSPMSMSSFSPWILTVGAASHDRLYSNSIILGNNVTILGVGLAPGTDENKLYKLIHAHDALNNDTTVADDIYSIRFVLGISTIKRASETAKNHSAAGVVFYMDPYVIGFQLNPVAMKTPGIIIPSTNDSKILMQYYNSSLEIDVVSKKVVKFGAVAAICGGLKANYSAASPKVMYYSARGPDPEDSLPRQADILKPNLLAPGNFIWAAWSSLGTDSVEFQGENFAMMSGTSMAAPHIAGLAALIKQKFPNFSPAAISSALSTTASQNDKSGGPIMAQRSYAFPDLSQTSATPFDMGSGFVNATGALNPGLILDTSYDDYMSFLCGINGSAPVVLNFTGQNCLLYNSTLQGPDLNLPSITLSKLNQSTVVRRTVQNIAGNNETYSVGWTAPFGVSVKVTPTHFSIANGEKQVLSVILNATANNSVASFGKIGLFGNQGHTVNIPISVIFKISYSNITTS	826

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g04273	826	Gene3D	Peptidase S8/S53 domain	176	687	IPR036852	GO:0004252\|GO:0006508
	Vifa1g04273	826	ProSitePatterns	Serine proteases, subtilase family, serine active site.	597	607	IPR023828	-
	Vifa1g04273	826	ProSitePatterns	Serine proteases, subtilase family, aspartic acid active site.	179	190	IPR023827	-
	Vifa1g04273	826	Pfam	Peptidase inhibitor I9	34	149	IPR010259	-
	Vifa1g04273	826	Gene3D	-	390	534	-	-
	Vifa1g04273	826	ProSiteProfiles	Serine proteases, subtilase domain profile.	154	674	-	-
	Vifa1g04273	826	Gene3D	-	691	816	-	-
	Vifa1g04273	826	FunFam	Subtilisin-like protease SBT1.5	176	399	-	-
	Vifa1g04273	826	Pfam	Fibronectin type-III domain	720	814	IPR041469	-
	Vifa1g04273	826	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	24	147	IPR037045	-
	Vifa1g04273	826	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	102	814	IPR045051	-
	Vifa1g04273	826	Pfam	Subtilase family	174	637	IPR000209	GO:0006508\|GO:0008236
	Vifa1g04273	826	SUPERFAMILY	Subtilisin-like	149	678	IPR036852	GO:0004252\|GO:0006508
	Vifa1g04273	826	CDD	Peptidases_S8_3	149	633	IPR034197	-
	Vifa1g04273	826	PRINTS	Subtilisin serine protease family (S8) signature	174	193	IPR015500	-
	Vifa1g04273	826	PRINTS	Subtilisin serine protease family (S8) signature	255	268	IPR015500	-
	Vifa1g04273	826	PRINTS	Subtilisin serine protease family (S8) signature	596	612	IPR015500	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g04273	Vifa-Chr1	661230690	661235433	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g04273	29	819	Subtilisin-like Serine Gene Family	AT4G20430	66.341	0.0	1102

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g04273	-		-	gmx:100796456	1335.86