Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04270 ATGGAAAGGAATGGTCAGATGGGTTTGATTGGAGAGAATTTTGAGTCTGGTTTGCTAGGGAGGCTGAGGGAAGATGAGTACGAAAGTAGGTCTGGAAGCGACAATTTTGACGGCGGCTCTGGCGATGATCTCGATGCTGGCGATGATCAGCCTAGGAGTAAGAAGAAGAAGTATCATCGACACACTCCGCAACAAATTCAGGAGCTCGAAAATTTCTACAAGGAGTGTCCTCATCCCGATGAGAAGCAAAGATCTGATCTTAGCAAGAAACTCGGCTTGGAGATCAAGCAAGTCAAGTTCTGGTTTCAGAATCGGCGAACTCAGATGAAGACACAAATGGAGCGCCATGAGAACATGATTCTGAGGCAGGATAATGATAAGCTTCGGGCGGAGAACAGTCTGATGAAAGATGCAATGGCCAATCCGATATGCAGCAACTGCGGTGGCCCAGCAATTCCTGGACAAATTTCAATGGAGGAACACCAGATTCGAATTGAGAATGCTCGACTGAAGGAGGAATTGGCCCGAGTGTGTAACTTGTCCAACAAGTTCCTCGGCCGCCCACTCTCGGCACTGGCCCCCATGTCTATGCACACTCAGAATTCTGGTCTTGAGTTTGGTATGGGAAGGAACGGTGTGGTTGGGCCAAACAATTTCAACATGTCGCTCCCAATGGGTTTTGATATGGGAGACGGGGTTATGGGAACTCCACCCCCATATCCTGGATCTCGAACACCGATGGGCATGATGGGCAGTGATGCTCAGCAGGAGAGATCTATGCTTCATGAACTCGCATTTGCTGCTATGGATGAGCTGATCAAGATGTCTCAGCCGGATTCCGCTCTCTGGATTAAGGGTTCAGATGGCACAAAGGAAGTGCTTAACCATGATGAGTACGCAAGAATTGGTTCTCCCTTTAACGATCCAAAACCAACTGGTTTTGTAACTGAAGCGTCAAGAGAAACCGGACAGTTATTCATCAGCAGCGCGGCCCTTGTGGAAATAATGCATGAAGCGGATCGGTGGTCAGAGATGTTTCCGTGTATGATTGCTCGAGCACAAACCTTGGATGTGATATCCAATGGTATGGATGGAAGCAGAAACGGATCTATACAAGTGATGCAAGCTGAGATTCAATTGCCTTCTCCATTAGTCCCTGTGCGACAATACACTTTCCTAAGGTATTGCAAGCAGCATGCTGAAGGTGTGTGGGTTGTTGTTGATGTTTCAATCGACATCAATCGTAATTCTGCCAATGGAAACCCTTTCATGGGTTGCAAGAGACTTCCTTCTGGATGCATTTTGCAGGATATGCCTAATGGTTGTTGCAATATTACTTGGGTTGATCATTCTCAATATGATGAGAGTGTTGTCCACCAAAACTTCCGACCATTGGTTAATTCTGGCACCGCGTTTGGTGCTCATAGATGGATTGCAACTCTCGAGAGGCAATGTGAATCCCTTGCAATCCTCATGTCTGCTGTACCAACCGAAGACACCACAGCTATAAGCCCAGCAGGAAAGAAAAGCACGTTGAAGCTTGCGCAGCGGATGTCTGACTACTTCTTGTCTGGAATTTGTCCTTCGTCGGCTTGCAAGTGGGACGTCCTTCATATGGGTAATATGGGAGACCATGACATGAAAATCATGTCTCGGAAACATATGGATGGCCCTGGTGAATGCATTGTGCTAAGTGCTTCAACTTCTGTTTGGATGCCGGTGTCACGTCAGAGGGTGTTTGATTTCCTCATTGAGACACGGATGAGAGGCGAGTGGGATGCTTTGTCCAACAGTGGAACCACGCAGGAGATGGTTCACATCGCTAAAGGTCAAGCACTTGGAAATTCCGTTTCTATCCTCCGTGTTAGTAATGCTGATGGTAACGGAAACGAGGCGAACATGCTATACCTACAAGATTCGTGGACTGATAGCACTGGCTCGATGATCGTGTATTCTCCAGTCAGTTTGCAATCCTTGAACATGGTGATGGGTGGCGGGGATTCTTCATTTGTTGCTCTTTTGCCTTCTGGCTTTTCAATTCTACCAGATGGCCACTCCAACAGCAACAATATTGGCGGAGGTTCAAGTGATGGAAGCGGCAACTTCGGCGGAGACAACGACAACAGCGGATGCTTGCTGTCAGTTGGAGTACAGATGTTGCTGAAGAACCTTCAAGCAGGCAAGATGACAAAGGAGACGGTTGATACTGTTAATACACTCATCGCAGGCACCATTCAGAAGGTCAAAGATGCTCTTGGAGTTGCATGA 2268 0.4744 MERNGQMGLIGENFESGLLGRLREDEYESRSGSDNFDGGSGDDLDAGDDQPRSKKKKYHRHTPQQIQELENFYKECPHPDEKQRSDLSKKLGLEIKQVKFWFQNRRTQMKTQMERHENMILRQDNDKLRAENSLMKDAMANPICSNCGGPAIPGQISMEEHQIRIENARLKEELARVCNLSNKFLGRPLSALAPMSMHTQNSGLEFGMGRNGVVGPNNFNMSLPMGFDMGDGVMGTPPPYPGSRTPMGMMGSDAQQERSMLHELAFAAMDELIKMSQPDSALWIKGSDGTKEVLNHDEYARIGSPFNDPKPTGFVTEASRETGQLFISSAALVEIMHEADRWSEMFPCMIARAQTLDVISNGMDGSRNGSIQVMQAEIQLPSPLVPVRQYTFLRYCKQHAEGVWVVVDVSIDINRNSANGNPFMGCKRLPSGCILQDMPNGCCNITWVDHSQYDESVVHQNFRPLVNSGTAFGAHRWIATLERQCESLAILMSAVPTEDTTAISPAGKKSTLKLAQRMSDYFLSGICPSSACKWDVLHMGNMGDHDMKIMSRKHMDGPGECIVLSASTSVWMPVSRQRVFDFLIETRMRGEWDALSNSGTTQEMVHIAKGQALGNSVSILRVSNADGNGNEANMLYLQDSWTDSTGSMIVYSPVSLQSLNMVMGGGDSSFVALLPSGFSILPDGHSNSNNIGGGSSDGSGNFGGDNDNSGCLLSVGVQMLLKNLQAGKMTKETVDTVNTLIAGTIQKVKDALGVA 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04270 755 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 52 752 IPR042160 -
Vifa1g04270 755 SUPERFAMILY Bet v1-like 505 686 - -
Vifa1g04270 755 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Vifa1g04270 755 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Vifa1g04270 755 MobiDBLite consensus disorder prediction 21 64 - -
Vifa1g04270 755 CDD START_ArGLABRA2_like 258 486 - -
Vifa1g04270 755 CDD homeodomain 55 113 IPR001356 GO:0003677
Vifa1g04270 755 SMART START_1 263 487 IPR002913 GO:0008289
Vifa1g04270 755 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Vifa1g04270 755 ProSiteProfiles START domain profile. 254 490 IPR002913 GO:0008289
Vifa1g04270 755 SUPERFAMILY Homeodomain-like 35 112 IPR009057 -
Vifa1g04270 755 SMART HOX_1 54 116 IPR001356 GO:0003677
Vifa1g04270 755 Gene3D - 306 489 IPR023393 -
Vifa1g04270 755 SUPERFAMILY Bet v1-like 257 488 - -
Vifa1g04270 755 Gene3D - 43 127 - -
Vifa1g04270 755 FunFam Homeobox-leucine zipper protein HDG1 40 128 - -
Vifa1g04270 755 Pfam START domain 263 487 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04270 Vifa-Chr1 660138711 660142841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04270 1 752 Homeobox Transcription Factor Family AT3G61150 50.980 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa1g04270 START 7e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04270 K09338 - gmx:100820113 995.342