Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04259 ATGGGCTTCCTCCGGCGACTTTTCGGCGGCAAAAAACACCACAATCCTCCACCGGAAACCGCCGCAAAGAAAGACAAAAAAACCTGGAGCTTAGTCAAAAACAGCACAAGAGACAAAACCAACCCAGTCTCGTTGAATAGCCACAAAAATACTGACACTTCCGCTTCTTTTGCCGAGAACTATGATGCCAATAAACATGCAATTGCTGTTGCCGCCGCTACCGCCGCCGTAGCCGAAGCTGCACTCGCCGCCGCTCATGCTGCCGCTGAGGTTGTCAGACTGACGAGTAACACTGATTCTGGACATTCCGCGGTTACACCTCAAACTCCGAAGACTGGCCGGAGATGCTCGCCGGAAGTAGTTGATGCCGCCGTGAAGATACAGTCGGCGTTCCGTGGTTACTTGGCAAGGAGGGCATTAAGAGCACTTAAAGCATTGGTGAAGTTGCAAGCGTTGGTGAGAGGCCACATTGTAAGAAAGCAAACTGCTGATATGCTAAGACGCATGCAAACATTGGTGCGACTTCAGTCTCGTGCACGCGCAAATCGCATGCACGTGTCTGATAGTATGCACTCTTTCAAGTCTTCACTTTCTCGAAATCCTATCCCCGGTGATTATGAGCACCGACTTCGTGTCCATAGGACAAAATGTGATGGATCTTCCATCCTCAAGAGATGTAGTTCCAATGCAAATTTTAGGGACATGAACTTAGAACGGGCACGGTTCGGTTCGAATTGGTTAGACGGTTGGATGGAAGAAAACCCGTGGAGCCAAAGTGGAGACACTTCATCGAAAATCATACGTCTTGATGACGAAAAGAGTGATAAAATTCTTGAAGTAGATACTTGGAAGCCACATTTGAACTCACACCATAGTACTAGCGCATCTTTCCAACATCATCATCATTCATCTTGTGATTACAATAATGAGAATTTTACGGTACACGAGTCACCGTCGAAACACTTGTTCAAACCTCACAATTCTAGTCTCTCTTCTTTGAAACATCAAAAAGATAAAGAAGAAGTAGCTTCCTCACGAACGACCGATTATAGTCCTCAAGCGCTTACGGCTTCTTCTAGACTCGAAAGTGGTTTGAGGAGAGGTCCTTTCACACCAACTAAAAGTGAGTCTTCATGGAGTTTTTTCAATGGTTACTCTGGCTGTCCTAGTTACATGGCAAATACTCAATCTTCTAGGGCTAAGGTTAGGTCACAAAGTGCTCCAAGACAAAGGCTAGAGTTTGAGAGAAACAGTGTTTCAACTACAAGATCTATTCAAGGTCTTTGA 1287 0.4577 MGFLRRLFGGKKHHNPPPETAAKKDKKTWSLVKNSTRDKTNPVSLNSHKNTDTSASFAENYDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSNTDSGHSAVTPQTPKTGRRCSPEVVDAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQSRARANRMHVSDSMHSFKSSLSRNPIPGDYEHRLRVHRTKCDGSSILKRCSSNANFRDMNLERARFGSNWLDGWMEENPWSQSGDTSSKIIRLDDEKSDKILEVDTWKPHLNSHHSTSASFQHHHHSSCDYNNENFTVHESPSKHLFKPHNSSLSSLKHQKDKEEVASSRTTDYSPQALTASSRLESGLRRGPFTPTKSESSWSFFNGYSGCPSYMANTQSSRAKVRSQSAPRQRLEFERNSVSTTRSIQGL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04259 428 MobiDBLite consensus disorder prediction 331 345 - -
Vifa1g04259 428 ProSiteProfiles IQ motif profile. 144 171 IPR000048 GO:0005515
Vifa1g04259 428 SMART iq_5 119 141 IPR000048 GO:0005515
Vifa1g04259 428 SMART iq_5 142 163 IPR000048 GO:0005515
Vifa1g04259 428 Pfam Protein of unknown function (DUF4005) 351 418 IPR025064 -
Vifa1g04259 428 MobiDBLite consensus disorder prediction 1 27 - -
Vifa1g04259 428 Pfam IQ calmodulin-binding motif 122 141 IPR000048 GO:0005515
Vifa1g04259 428 Pfam IQ calmodulin-binding motif 144 161 IPR000048 GO:0005515
Vifa1g04259 428 Gene3D - 120 173 - -
Vifa1g04259 428 MobiDBLite consensus disorder prediction 98 117 - -
Vifa1g04259 428 MobiDBLite consensus disorder prediction 12 27 - -
Vifa1g04259 428 PANTHER IQ-DOMAIN 5-RELATED 24 415 - -
Vifa1g04259 428 ProSiteProfiles IQ motif profile. 122 148 IPR000048 GO:0005515
Vifa1g04259 428 MobiDBLite consensus disorder prediction 317 375 - -
Vifa1g04259 428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 165 IPR027417 -
Vifa1g04259 428 MobiDBLite consensus disorder prediction 346 360 - -
Vifa1g04259 428 MobiDBLite consensus disorder prediction 98 113 - -
Vifa1g04259 428 MobiDBLite consensus disorder prediction 396 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04259 Vifa-Chr1 658993705 658996722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04259 1 427 IQD Protein Family AT5G62070 45.351 9.47e-62 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04259 - - gmx:100785181 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04259 1 658993705 658996722 Vifa1g04259 1 658993705 658996722 ECH
Vifa1g04259 1 658993705 658996722 Vifa3g02982 3 840633245 840636470 PCT