Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04258 ATGGAACAGTTGAAATTGGATGCAAATTCTGACGCTAAAGAGGATGGTCCTCTTCGGCACAAGCCGAAAAAGAACAATGCACTCGAGGCTTCTGAAAGTTTGAGAAGTAAAAACATATCTGCTAGATGGGATCCAGCCGAAGCATGTCGGCCAATAATAGATGAAGCACCTGTGTTTCATCCGACTATTGAAGAGTTTGAAGATACTCTGAGTTATATTGCAAAGATACGCCCCCTAGCTGAACCTTATGGGATATGTAGGATTGTCCCTCCGGCTTGTTGGGTTCCACCTTGTCTTCTTAAGGAGAAAGATATATGGGAAAATGCTGAATTTTCGACCCGTATTCAGCAAATTGATTTACTTCAAAATAGAGAACCTATGAGGAAAAAAAGTAGGGGAAGGAAACGAAAACGTAGAAAGAACTCCAAAACAGGAACATGTAGGAGAGTTTCCAATTCTGCTCCTGAGGCTAATAAAGCTTGTGAAGCTGAAGAGAAATACGGATTCCAATCAGGGTCGGACTTTACGTTTAAAGACTTTCAGCAATATGCTAGTTATTTTAAGGAATGCTACTTTGGGTTGAAAGATGCCAATGACAGCGACAAACTCTGTGATAGTAACCACCAACAGAGACCACAGCCCTCTGAGGAGGAAATTGAAGGTGAATACTGGCGGATAGTTGAGCAACCAACTGACGAAGTTGAGGTGTTTTATGGAGCTGACTTGGAAACTGGAGTATTTGGAAGTGGTTTTCCTAAGGCATCGTCTTTAACTAAGGGTTATCCGGATCAGTATGCCCTTTCTGGTTGGAATCTAAATAACTTCCCACGACTACCAGGTTCTGTACTAAGTTTTGAAGGAAGTGACATCTCAGGAGTACTAGTTCCATGGCTGTATGTTGGCATGTGCTTTTCATCGTTTTGCTGGCATGTTGAGGATCATCACCTCTATTCGCTTAATTATCTACACTGGGGTGACCCAAAAATATGGTATGGAGTACCTGGAACCCATGCTTCTCCTTTTGAAGATGCAATGAAGAAGCACTTGCCTGATTTGTTTGAAGAACAACCTAATCTACTCAATGATCTGGTTACTCAGTTATCTCCATCAATTCTTCAATCTGAGGGAGTTCCCGTTTATCGCACCGTTCAGCATTCTGGGGAATTCGTCATTACCTTTCCAAGGGGGTACCACTCTGGGTTCAATTGTGGTTTCAACTGTGCAGAAGCAGTGAATGTAGCTCCTGTTGATTGGTTAATGCATGGCCTGAATGCTGTTGAGCTTTATAGTTTACAACGCCGTAAAACATCATTGTCACATGACAAGCTCTTATTTGGATCATCATTAGAAGCTATACGAGCCCTGGCAGAGTTAACTCTTCATGGAAAGGAAAGTCCGAAAAATTTGAAATGGAAAAGCGTGTGCGGGAAAGATGGAGTTCTTACTAATGCATTTAAGGCAAGGATTAAGATGGAAGAAGAGAGGCTAGCCTGTCTTCCAACTCATTTTAATTTGCGGAAGATGGCCAATGACTTTGATTTGCATACAGAAAAAGAATGCTTCTCTTGTTTCTATGACTTATACCTATCTGCAGTAGGTTGTGAGTGCTCTCCTGATAGATATTCCTGTCTTAAGCACACAAGTTCGCTTTGCTCATGCGAAATGGACAAAAGATTTGTTCTTCTTCGACATAATATGAATGAGCTAAACAAATTGCTTGAAGCACTAGAAGGAGATTCTCGTGCTCTCGAGTTATGGGAAAATAGAAACTTCGGAATGGTTTCTGATGAGGCCAATGAGGTGGAGGGAGAAAAAGGTCTCGGAGACACCAAGGATAGTTCAAATATTAATGTTTCGTCAGAGCCAATGCAGTGTGAATCTCACCCTATAACTCATAGTGCACCAAATGAAAGTATAGATAGTGATAGTGACAATAAAATTATTGTAGACAAAGATACGGTGGACCATGCAGCTTCTCTAGATTTGAACCTTGATCTTAAATCTGGTGAAAATCAAAAGCATTTGCTGCATATTACCGAGAACCATCTCGACAAGGGCGATTCAGTAGAGGAAAAAGTCAGCTGTTTAGAGAGCAAAAAGGAACAAAACAACATGGAACTTGTTGGTATGGGTAACCTATCACATTCATTTTCTGTTGTGAAAACAGAAGTTTCATCATGTTCAAGAGATATTCACAATTCTTGTACATCTGATGGTGGAAAATATGAGGTGGATCTGCAAATTGATTCCGAATCTAGAAAGAAACCCAAAATTGCGTGTGAAAATACAAGTATCTCTTTGACACAGGAGAGCTGCCTAATGCAAATTTTTGCTACTTCTGTCAAGCCTATAAGTTTAGGATACGTTGTTCATGGAAAGCCATGGTCCAGTAAGAATGCAATATATCCAAAAGGATTCAAGAGTCGAGTTAATTTCTTTAATATTCTGAATCCAACAAGAATCTGTAGCTATGTTTCGGAAGTCATTGATGCTGGACTTCTTGGTCCTCTTTTCAAGGTTACAATGGAAGAAAGTCAAAGTGACACTTTCACGAACACCTCAGCAGATAAGTGTTGGGAATCAGTTCTAAAGAGACTGCATAATGAAATTATGGAGCGAAGAAATCGAGGTGAAACTGAACTTCCTTCCTTAGAGCTTCTGAACAACATTAACGGTCTTAGAATGTTTGGCTTCCTTTCGCCGTCCATTATTCAGGCCATCGAAGGTCAAGATCCCGGTCATCAGTGTGCAGAGTATTGGAATCACAAAGTTTTCCCTACATCTCCAGGCAGTGTAATCGATAACCGTAATGTCCTATGTTGTTCAAGTAGCCCTTCAGATAATAACGTCAACATCAAAGTTTTCGGTATCAATTTGATTGATCACACAAAGGACAACATAAGAGGAAGTTGTCATTCTCTTGAAGAGATGAAATCAATACTACAAAAGGCAAGTCCTGAAGAGCTAAACTTGTTGCACAAGTTACTTATCTCGGACTCACAGTGCTCCGAGTGGAGAACGACATTGACATCAGTGATGGATGAGATCCAGAAAGGTTTGTAG 3063 0.4058 MEQLKLDANSDAKEDGPLRHKPKKNNALEASESLRSKNISARWDPAEACRPIIDEAPVFHPTIEEFEDTLSYIAKIRPLAEPYGICRIVPPACWVPPCLLKEKDIWENAEFSTRIQQIDLLQNREPMRKKSRGRKRKRRKNSKTGTCRRVSNSAPEANKACEAEEKYGFQSGSDFTFKDFQQYASYFKECYFGLKDANDSDKLCDSNHQQRPQPSEEEIEGEYWRIVEQPTDEVEVFYGADLETGVFGSGFPKASSLTKGYPDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGTHASPFEDAMKKHLPDLFEEQPNLLNDLVTQLSPSILQSEGVPVYRTVQHSGEFVITFPRGYHSGFNCGFNCAEAVNVAPVDWLMHGLNAVELYSLQRRKTSLSHDKLLFGSSLEAIRALAELTLHGKESPKNLKWKSVCGKDGVLTNAFKARIKMEEERLACLPTHFNLRKMANDFDLHTEKECFSCFYDLYLSAVGCECSPDRYSCLKHTSSLCSCEMDKRFVLLRHNMNELNKLLEALEGDSRALELWENRNFGMVSDEANEVEGEKGLGDTKDSSNINVSSEPMQCESHPITHSAPNESIDSDSDNKIIVDKDTVDHAASLDLNLDLKSGENQKHLLHITENHLDKGDSVEEKVSCLESKKEQNNMELVGMGNLSHSFSVVKTEVSSCSRDIHNSCTSDGGKYEVDLQIDSESRKKPKIACENTSISLTQESCLMQIFATSVKPISLGYVVHGKPWSSKNAIYPKGFKSRVNFFNILNPTRICSYVSEVIDAGLLGPLFKVTMEESQSDTFTNTSADKCWESVLKRLHNEIMERRNRGETELPSLELLNNINGLRMFGFLSPSIIQAIEGQDPGHQCAEYWNHKVFPTSPGSVIDNRNVLCCSSSPSDNNVNIKVFGINLIDHTKDNIRGSCHSLEEMKSILQKASPEELNLLHKLLISDSQCSEWRTTLTSVMDEIQKGL 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04258 1020 MobiDBLite consensus disorder prediction 122 153 - -
Vifa1g04258 1020 Gene3D Cupin 41 414 - -
Vifa1g04258 1020 SMART fyrc_3 837 931 IPR003889 GO:0005634
Vifa1g04258 1020 PANTHER LYSINE-SPECIFIC DEMETHYLASE 51 881 - -
Vifa1g04258 1020 Pfam F/Y-rich N-terminus 784 828 IPR003888 GO:0005634
Vifa1g04258 1020 MobiDBLite consensus disorder prediction 620 642 - -
Vifa1g04258 1020 SMART JmjN_1 55 96 IPR003349 -
Vifa1g04258 1020 MobiDBLite consensus disorder prediction 1 33 - -
Vifa1g04258 1020 MobiDBLite consensus disorder prediction 620 643 - -
Vifa1g04258 1020 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Vifa1g04258 1020 Pfam F/Y rich C-terminus 835 922 IPR003889 GO:0005634
Vifa1g04258 1020 SMART fyrn_3 787 831 IPR003888 GO:0005634
Vifa1g04258 1020 SUPERFAMILY Clavaminate synthase-like 261 445 - -
Vifa1g04258 1020 Gene3D - 777 917 - -
Vifa1g04258 1020 ProSiteProfiles FYR domain FYRN motif profile. 773 831 IPR003888 GO:0005634
Vifa1g04258 1020 ProSiteProfiles FYR domain FYRC motif profile. 833 923 IPR003889 GO:0005634
Vifa1g04258 1020 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Vifa1g04258 1020 FunFam Putative lysine-specific demethylase JMJ16 779 917 - -
Vifa1g04258 1020 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Vifa1g04258 1020 Pfam jmjN domain 57 90 IPR003349 -
Vifa1g04258 1020 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Vifa1g04258 1020 MobiDBLite consensus disorder prediction 128 145 - -
Vifa1g04258 1020 Coils Coil 559 589 - -
Vifa1g04258 1020 SMART cupin_9 264 430 IPR003347 -
Vifa1g04258 1020 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04258 Vifa-Chr1 658816610 658821289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04258 744 960 JUMONJI Transcription Factor Family AT1G30810 42.857 2.11e-48 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa1g04258 JmjC 4e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04258 K11446 - gmx:100801775 1475.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04258 1 658816610 658821289 Vifa1g04258 1 658816610 658821289 ECH