Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04256 ATGGCAAATCAACGATCTTCCTTCACCTACGACGTTTTCATAACCTTCTCCGGCGGCCATACTCGTTACGGTTTTGCCGGCAATCTCTGGAAATCTCTCAGCAACAGAGGAATCAACACATTCATCGATGACCATGAAGAGGACCTTTCCAAAGGAAACGAAATCGATTCAACACTTTTGAATGTCATCAACGACTCAAGAATTGCCATTATTGTGTTTTCTAACAACTATGCTTTTTCACCCTTTTGCTTGCAACTACTTGTCTATATCCTTGACAGTTTTGTCTTGAATCATCGCTTTATTTTCCCTGTTTTTTACGATGTGGATCCTGCTGTTGTGAGATATCAAAGAGGAACTTATGCTGAAGCTTTTTCAAAGCATGAGAAGAAATTCAAAGATATGAAAGACAAAGTTAAGAAATGGAGGAACGCTTTATATCAAGTAGCTAACTTGTCAGGATTTCATTACAATCATGGGGATGGATATGAATTTGAGTTTATTGAGAGGATTGTGGAAGAAGTCTCCAGTAAGTTTGATCTTGTTCCTGTACATATTGCGAATTACACGGTCGGATTGGAGTCTCAATTGGAAGAAGTGTGTTCACTTTTAGAGTTGGGATCAAAACAAGTCCTTACAGTGGGGATCTATGGGGTTGGTGGAATAGGTAAAACAGTACTTGCTCGAGCTGTTTATAATAAGATTGGAGACCAATTTGAAGCTTTATGTTTTCTTGCCAATGTTAGTGAAAATTCAAATTTGCATGGACTAATTCACCTCCAGAATAGGCTTCTTTCAGAAATGGTTGGATTGAAAGATATTCAGTCAGAAAATGCTAGTAATGGAGTTTCAGTAATAAAGTATAGGCTCCGCCGAAAAAAAGTTCTTCTCATCCTAGATGATGTTGACACACTTGAGCAACTAGAGACCTTAGTTGGAGGACTTGATTGGTTTGGTCCTGGTAGCAGAGTTATCGTTACAACACGGGACAAACATTTGCTAGCATTTCACGGGTTTGATATAATATACGAGGTACAAGAGTTGAATCACGTAGACGCTCTTGAGTTGCTTAGCCACAGGGTTTTTAAGCAAGGCACTGTTGATCCAAATTACACAGAACTTTTAAGCCGAGTAGTAACTTATGCTTCCGGGATTCCATTGGCCTTGGAAGTAATCGGTTCCAACTTGTTTGGAAAAAGTGTTGACCAATGGCAACATACATTAAATCGGTTGGAGAGAAATCCTCCCAACAACATCCAAAATATTCTTAGAATAATCTTCAATGATTTGGATCAAGAGGAGAAGAACGTTTTCCTTGACATTACTTGTTGCTTCAAAGGATATGAATTGACAGATGTTGAAGATATTCTCCATGCTCGTTATGGTGAAGACGTGAAATATCATATCGGAGCGTTGATTGACAAGTCTCTCATACATATCAGTTTGGATGGTAAGGTGACACCACATCCCTTGATAGAGAGAACAGGTAAAGAAATTGTCCATGATGAATCGCCAAGCGATCCTGGGAGACGTAGTAGATTATGGTTCCGAGAAGATATAGTTCAAGTCCTAAAAAATAATAAGGGAACTAGTAATATTGAAATCATACATCTAGATTCCACCTTAATTGAAAATGAAGAAGCAATAGAATGGGATGGAGAGGCCTTCGAGGAGATGCCAAACCTCAGAATACTTATTATTAGAAAATGTCATTTCTCCAAAGCTCCCAAGTATCTTCCAAACAGTTTAAAAGTATTGGAATGGTGGAGATATCCTTCGGAGGAGTTACCATCTGATTTTGATTCAAAGAAACTTGTTATATGCAAGCTACCGAACATGGGCTTCATGTCACCCGATCTAACTGGTGATCCTGATGTTTCACAGACTTTAGACAAAATTGCTAGAGTTGTATTGCAAATTTCACATGGGGATTTTCAAACCGAGACGGCTTGGAGACTAGTTGGCCTTATGTCAAGTGTAGTTGGCCTGTCATGTTATGCTCTAAGCCCTTCTTTCGATCGATTAATTGGAAGGTGGAAACCTTTCAAGTTCTTTCTTTATGGGCTCTTGTCCTTAGCTATTTTGACAAGCATATTGTTTGCAAAGCATTCATCACTTTCCACAAGACATTTTCATCTCAAAACTTACATGAGCTTTGCGGTTTTGATGATCATCTCAGTGTACTCATTCTTCTACGACAAAGCTGTGAATGGGAAACCTGAAACATTGAGTATAGTTTCAAACGCTGCATTTGCTTTGGTGTCATTAAGCTTGCACAAACTGATTAAGTTTGGAGTTGAGATTGGTATGTTCTCTTATTTCTTAGGTTGCTTTGCAGTTCAACTGTTAACCATCAACTGGATGTTGATTTTTGTTGCAATATTCTTTGGCTGTCCGCTTTTTGTTATGCATTCCTCTAAGAATTCCCGACAAGAGGTAGGTACTGGAATTCCTCTATGA 2457 0.3875 MANQRSSFTYDVFITFSGGHTRYGFAGNLWKSLSNRGINTFIDDHEEDLSKGNEIDSTLLNVINDSRIAIIVFSNNYAFSPFCLQLLVYILDSFVLNHRFIFPVFYDVDPAVVRYQRGTYAEAFSKHEKKFKDMKDKVKKWRNALYQVANLSGFHYNHGDGYEFEFIERIVEEVSSKFDLVPVHIANYTVGLESQLEEVCSLLELGSKQVLTVGIYGVGGIGKTVLARAVYNKIGDQFEALCFLANVSENSNLHGLIHLQNRLLSEMVGLKDIQSENASNGVSVIKYRLRRKKVLLILDDVDTLEQLETLVGGLDWFGPGSRVIVTTRDKHLLAFHGFDIIYEVQELNHVDALELLSHRVFKQGTVDPNYTELLSRVVTYASGIPLALEVIGSNLFGKSVDQWQHTLNRLERNPPNNIQNILRIIFNDLDQEEKNVFLDITCCFKGYELTDVEDILHARYGEDVKYHIGALIDKSLIHISLDGKVTPHPLIERTGKEIVHDESPSDPGRRSRLWFREDIVQVLKNNKGTSNIEIIHLDSTLIENEEAIEWDGEAFEEMPNLRILIIRKCHFSKAPKYLPNSLKVLEWWRYPSEELPSDFDSKKLVICKLPNMGFMSPDLTGDPDVSQTLDKIARVVLQISHGDFQTETAWRLVGLMSSVVGLSCYALSPSFDRLIGRWKPFKFFLYGLLSLAILTSILFAKHSSLSTRHFHLKTYMSFAVLMIISVYSFFYDKAVNGKPETLSIVSNAAFALVSLSLHKLIKFGVEIGMFSYFLGCFAVQLLTINWMLIFVAIFFGCPLFVMHSSKNSRQEVGTGIPL 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04256 818 FunFam Disease resistance protein (TIR-NBS-LRR class) 6 180 - -
Vifa1g04256 818 SMART AAA_5 209 347 IPR003593 GO:0016887
Vifa1g04256 818 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 613 IPR044974 GO:0006952
Vifa1g04256 818 Gene3D - 4 181 IPR035897 -
Vifa1g04256 818 Gene3D - 346 430 IPR042197 -
Vifa1g04256 818 SUPERFAMILY "Winged helix" DNA-binding domain 417 524 IPR036390 -
Vifa1g04256 818 Gene3D - 182 337 IPR027417 -
Vifa1g04256 818 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 154 IPR035897 -
Vifa1g04256 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 440 IPR027417 -
Vifa1g04256 818 Pfam NB-ARC domain 195 416 IPR002182 GO:0043531
Vifa1g04256 818 ProSiteProfiles TIR domain profile. 8 178 IPR000157 GO:0007165
Vifa1g04256 818 PRINTS Disease resistance protein signature 212 227 - -
Vifa1g04256 818 PRINTS Disease resistance protein signature 288 302 - -
Vifa1g04256 818 PRINTS Disease resistance protein signature 381 395 - -
Vifa1g04256 818 PRINTS Disease resistance protein signature 556 572 - -
Vifa1g04256 818 Pfam TIR domain 10 177 IPR000157 GO:0007165
Vifa1g04256 818 Gene3D Ribonuclease Inhibitor 512 644 IPR032675 -
Vifa1g04256 818 SMART till_3 9 151 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04256 Vifa-Chr1 658214447 658218401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04256 6 611 WRKY Transcription Factor Family AT4G12020 31.179 4.59e-68 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04256 - - psat:127132204 1433.7