Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04250 ATGTTTGATTCTTCAAAGTCAATCAATCAATCGATTCAAACTAGCGCACAACATTCTTGCTGTGCGTTTTTTTCAATCAAATATATTGCAGCTATGCGGAGTCACATTGTGTGTAGTGGGTGTAGGAACATGTTGCTTTACCCTAGAGGAGCAACCAATGTTTGCTGTGCATTGTGCAACACAATTACCCCTGTTCTTCCTCCTGGAATGGAAATGTCACAACTTTATTGCGGAGGCTGTAGGACATTGCTGATGTACACACGTGGTGCTACAAGCGTGAGATGTTCCTGCTGTAACACTATAAATCTTGTGCCAGATTCTAATCAAATGAGCCATATCCATTGTGGGAACTGTCGGACAACACTCATGTATCCTTATGGAGCTCCCTCGGTCAAATGTGCAATATGTCACTTTATTACTAATACGACCAATGGAAGGCCACCGGTTCCTGCACAGAGACCTAATGAAACAACCAGTTCCGAAACGTCAAGACCTCGCTTTGAGAGCCAAACTGTAGTAGTAGAAAATCCTATGTCCGTTGATTCAAGTGGGAAATTGGTAAGCAATGTCGTTGTGGGCGTTACAACAGAGAAGAAGTGA 600 0.43 MFDSSKSINQSIQTSAQHSCCAFFSIKYIAAMRSHIVCSGCRNMLLYPRGATNVCCALCNTITPVLPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCNTINLVPDSNQMSHIHCGNCRTTLMYPYGAPSVKCAICHFITNTTNGRPPVPAQRPNETTSSETSRPRFESQTVVVENPMSVDSSGKLVSNVVVGVTTEKK 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04250 199 PANTHER PROTEIN LSD1 34 66 IPR040319 -
Vifa1g04250 199 NCBIfam zinc finger domain, LSD1 subclass 74 104 IPR005735 -
Vifa1g04250 199 NCBIfam zinc finger domain, LSD1 subclass 35 64 IPR005735 -
Vifa1g04250 199 NCBIfam zinc finger domain, LSD1 subclass 112 140 IPR005735 -
Vifa1g04250 199 MobiDBLite consensus disorder prediction 146 169 - -
Vifa1g04250 199 Pfam LSD1 zinc finger 38 62 IPR005735 -
Vifa1g04250 199 Pfam LSD1 zinc finger 77 101 IPR005735 -
Vifa1g04250 199 Pfam LSD1 zinc finger 115 139 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04250 Vifa-Chr1 657409789 657412022 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vifa1g04250 zf-LSD1 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04250 - K12191 gmx:100527656 296.589