Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04240 ATGGCACCTTCTCGGGTGGCAGGAGGTTTAGCCCAATCATCATCAAGTTCTGGAATTTTTTTTCAAGGAGAGGGACAGCCGCATAATTTAGTTAACTCTCACTTGAGTTCATCTTTAGTTAACTCGTCTAACACTGTGCCTGGAACTGGTCATTCCAACCTTGGTCCAGTTCCTGGGGATATGAACAATGCAATTTTGAACAGTGTTGCAAACTCAGCACCAAGTGTTGGAGCTAGTTCTTTAGTTACGGATGCGAATTCTGCACTCTCTGGTGATCGCCATATGCAAAGAAGTGCGAGCATTAATGGAGACTCATACTTAAGATTACCTGCCTCGCCATTGTCGTTCACATCGAATAATATTAGTATTTCTGGGTCACCTGCAATGGATGGTTCATCTGTTGTACAGCAGAATTCTCATCAAGATCAGAATGCTCAACAATTGCAGCAGAATCAACAGAAGCTGCAGGGTGGTTCAAGTTCTATGCATTTGCCCGCTTCTCAAACTGGCTCTTCTTCGCACCAAATGGGTGCACAAGTTGCAGGATCTTTCATTCAAGATCCAAATAGTATATCCCACTTGCTGAAAAAACGTAGGCTGGATATCAAACCAGATGATATAATGCAACAACAGGCTATGTTTCAGCAACAGCACAGGCTTAAGCAACAACAAATCTTTCAGTCGTTGCCCCAGGCTCAGCGGATGCAATTGATACAACAACAGCAGCAACAGCAACAACAGCAGCAGCAACAAATGCAGAGGCAGCAACTACAACAACAAATGATGCAGCCCTCGGCTGGTGTGAAGCGTCCATATGATGGTGGTGTTGGAGGTGTATGTGCCCGTCGATTGATGCAGTATCTCTATCATCAAAGACAGCGACCAAGTGATAATAGTATTGCGTATTGGAGAAAATTCGTGGCTGAATATTACTCTCCTCGTGCAAAGCAACGGTGGTGTTTGGCATTATATAGTAATGCTGGACACCATACAGCTGGTGTTTTACCGCAAGCAACTACACATGCTTGGCACTGTGACATATGTGGAGCCAAATCTGGAAGAAGGGGATTTGAGGCAACTTTTGATATACTACCCAGACTTAACGTAGTCAAATTTGACGGTGGAGTGATCGATGAACTTTTGTTTTTGGACTTGCCTCGGGAAATAAGATTTGCATCTGGTTTGATGATGTTAGAATATACAAAAGCAGTTCAAGAGTGTGTGTACGAGCAGCTCCGTGTAGTTCGTGAGGGTCAACTTCGTATCGTATTTACTCAAGACCTAAAGATATTTTCTTGGGATTTCTGTGTAAGGCGCCACGAAGAACTTCTTCCTCGAAAGTTAGTTGCCCCACAGGTCAACCAATTAGTTCAGGTAGCTCAAAAATGCCAAAGTACGATTTCTGAAAGTGGGTCAGACGGGGTTTCTCAGCATGACTTGCAATCAAACAGCAACATGGTCCTAACTGCTGGGCGTCAGCTTGCGAAGAGTTTGGAACTACAATCACTAAATGACTTAGGCTTTTCAAAAAGATTTGTGAGAACTTTGCAGATTTCTGAGGTTTGCAATAACATGAAAGATCTAATTGATATCAGTTCTGATCAAGATATCGGAGCAATTGAGAGTTTGAAAAATTATTCTCAATTTTCAACCGCGTCAAAGCACCAAATGCAAAAGATGCAGGAGATGGAACAGGCAGCAAATGCTCAAGGTCTCCCATCTGATCGAAATACCCTTAATAAACTGATGGCATTGAATCCTGGATCGAACAATCATATAACCAATAATCACAACAATATGGGCAATCGCGGTGCTTTGACTGGGCCATCACAAGCTGCTTTGGCAATGTCTAGTTATCAGAATATTCTCATGAGGCAAAACTCGATGAATTCAAGTCCTAGCTCACTTCATCGAGAAGGGTCCCCTTTCAATAACCCGAACCAAAGTCCCTCGTCAGCTTCTTTGCAAGGTGGTGCTGGGGCTGCTGCTATAATCCCCGGCTCTATGCAGAATTCACCTCACAACAGTAGTGGTGGATTCTCAAATCAACATATATCGGCTCAGCAACAGCAGCGGCAGCAGCAGCAACAACACCTTCAACAACGCTCGTTAAGTGCGAATAATTTACCTCAACAAAATCACTCACAAGGACCTCAAGGAAATCAATTACTGCAACAGCAGCAGATGATCCAGCAACTACTACAAGATATGTCAAATAACAATGGCGGGGGAGTGCAACAACCGTCTCATAGTGGACCCAATGTAAGTGGGAATATGGCAAAGAATAATAATTTGGGTTTTGGGGGTCAAACTCCACCCACAACCGGAGGAGGAGGCGGGTCTGCCAGTGGTCAAGCAAATAACGGACCTGTTTCAAGGAGTAATAGCTTCAAAGCAGCTTCAAACAGTGATTCTTCTGCAGCAGCTGGTGGAGGAAGCAACACTGGATTCAACCAGAGATCATCTGACATGCCACCGCAGAATCTCGCATTGCAAGACATATCCGATTTCGCCACTGATTTTGCTGATAACCCTTTCTTTAACAGTGATCTAGATGATAACATGGGTTTTAACTGGAAGACATGA 2586 0.4381 MAPSRVAGGLAQSSSSSGIFFQGEGQPHNLVNSHLSSSLVNSSNTVPGTGHSNLGPVPGDMNNAILNSVANSAPSVGASSLVTDANSALSGDRHMQRSASINGDSYLRLPASPLSFTSNNISISGSPAMDGSSVVQQNSHQDQNAQQLQQNQQKLQGGSSSMHLPASQTGSSSHQMGAQVAGSFIQDPNSISHLLKKRRLDIKPDDIMQQQAMFQQQHRLKQQQIFQSLPQAQRMQLIQQQQQQQQQQQQQMQRQQLQQQMMQPSAGVKRPYDGGVGGVCARRLMQYLYHQRQRPSDNSIAYWRKFVAEYYSPRAKQRWCLALYSNAGHHTAGVLPQATTHAWHCDICGAKSGRRGFEATFDILPRLNVVKFDGGVIDELLFLDLPREIRFASGLMMLEYTKAVQECVYEQLRVVREGQLRIVFTQDLKIFSWDFCVRRHEELLPRKLVAPQVNQLVQVAQKCQSTISESGSDGVSQHDLQSNSNMVLTAGRQLAKSLELQSLNDLGFSKRFVRTLQISEVCNNMKDLIDISSDQDIGAIESLKNYSQFSTASKHQMQKMQEMEQAANAQGLPSDRNTLNKLMALNPGSNNHITNNHNNMGNRGALTGPSQAALAMSSYQNILMRQNSMNSSPSSLHREGSPFNNPNQSPSSASLQGGAGAAAIIPGSMQNSPHNSSGGFSNQHISAQQQQRQQQQQHLQQRSLSANNLPQQNHSQGPQGNQLLQQQQMIQQLLQDMSNNNGGGVQQPSHSGPNVSGNMAKNNNLGFGGQTPPTTGGGGGSASGQANNGPVSRSNSFKAASNSDSSAAAGGGSNTGFNQRSSDMPPQNLALQDISDFATDFADNPFFNSDLDDNMGFNWKT 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04240 861 PANTHER LIM DOMAIN-BINDING PROTEIN 41 826 IPR029005 -
Vifa1g04240 861 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g04240 861 Pfam LIM-domain binding protein 283 544 IPR029005 -
Vifa1g04240 861 MobiDBLite consensus disorder prediction 737 827 - -
Vifa1g04240 861 Coils Coil 235 260 - -
Vifa1g04240 861 MobiDBLite consensus disorder prediction 668 703 - -
Vifa1g04240 861 MobiDBLite consensus disorder prediction 8 22 - -
Vifa1g04240 861 MobiDBLite consensus disorder prediction 38 59 - -
Vifa1g04240 861 MobiDBLite consensus disorder prediction 586 608 - -
Vifa1g04240 861 MobiDBLite consensus disorder prediction 628 656 - -
Vifa1g04240 861 MobiDBLite consensus disorder prediction 628 703 - -
Vifa1g04240 861 MobiDBLite consensus disorder prediction 122 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04240 Vifa-Chr1 655341394 655345596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04240 268 546 C2H2 Transcription Factor Family AT1G43850 54.839 1.09e-99 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04240 - - gmx:100816886 1001.12