Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04220 ATGACACCGGTTAATGGTACCACAATTGCAATACAGAGTCCAAGTTCACACGACCTGCAAATTTATGGGATTGTTGTGACTATTGTGTTATGCTTTATTGTATTTGGAGGAGTGAAGATGATAAATCGGGTTGCACCTGCATTTCTTATACCTGTTTTATTCTCACTCGTCTGCATATATTTGGGAATTCTGTTGGCAAAGGAGGATCATCCCACAGAGGGAATTACTGGGTTGAGTTTGAAGACTATTAAAGAAAATTGGAGCTCAGATTATCAAAAGACTAATGATGCTGGAATTCCAGATCCCAATGGTTCTGTAACCTGGAATTTCAATTCTTTGGTGGGCCTTTTTTTCCCAGCAGTGACAGGAATAATGGCAGGTTCTAACCGATCATCTTCTCTGAGAGATACTCAACGATCTATTCCTGTGGGAACTTTATCTGCAACTCTTGTAACTTCTATTATGTATCTTATTTCTGTGATAATGTTTGGCGCCATTGCCACCAGAGAGAAGCTTTTAACTGACAGGTTGCTTTCAGCTACAGTTGCCTGGCCTTTTCCTTCATTAATTAAAATTGGGATTATTCTTTCAACCATGGGTGCTGCTCTTCAGAGCCTGACCGGCGCCCCACGTCTGCTTGCAGCTATAGCCAATGATGATATTTTACCTATTCTAAACTACTTTAAAGTCGCAGATGGTAGCGAGCCACATGTTGCTACCCTTTTTACTGCTTTCCTATGTATTGGGTGTGTCATCATTGGGAATCTGGATCTTATCACTCCAACTGTGACCATGTTTTTCCTTTTGTGTTATTCTGGTGTCAACTTGTCCTGCTTCCTTCTCGATTTACTAGATGCTCCTAGTTGGCGTCCTCGGTGGAAATTTCATCATTGGAGTTTGTCACTTCTAGGAGCATTACTTTGTGTAGTGATCATGTTCCTAATCTCTTGGTCATTCACTGTGGTTTCTTTGGCCCTTGCAAGTCTTATATATAAGTACGTGAGCATCAAAGGAAAAGCTGGGGACTGGGGAGATGGTTTCAAAAGCGCTTATTTCCAACTTGCACTTCGTAGCCTTCGGTCGCTAGGAGCAAATCAAGTGCACCCAAAGAATTGGTATCCAATTCCGCTAGTGTTTTGTCGGCCCTGGGGAAAACTGCCCGAAAATGTTCCCTGTCATCCCAAACTTGCCGACTTCGCTAACTGTATGAAGAAGAAAGGTCGAGGAATGACTATATTTGTCTCCATACTAGACGGGGATTACCATGAATGCGCTGAAGATGCCAAGACAGCTTGTAAACAACTTAGTACCTACATTGAGTACAAGAATTGTGAAGGTGTGGCCGAGATTGTTGTAGCTCCTAACATGTCTGTAGGTTTTCGTGGCATTGTTCAGACAATGGGCCTTGGCAACCTCAAACCGAACATCGTGGTGATGCGTTATCCAGAAATCTGGCGCCGGGAGAACTTAACAGATATCCCTGCCACCTTTGTTGGTATAATTAATGACTGCATTGTTGCAAACAAAGCAGTAGTTATAGTGAAGGGTCTCGATGAATGGCCAAACGTGTACCAGAAGCAATACGGTACAATTGACTTGTATTGGATTGTTTTCTGTATTGCAGAAGAGGATGCAGATGCAGAGGGGCTGAAAGCTGATGTTAAAAAATTCCTTTACGATCTTCGGATGCATGCAGAAGTCTTTGTCATAACAATGAAATGGGATGTACAGGTGGATAGTGGGTCTCCACAAGATGAATCATTAGACGCATTTACCAGTGCTAATCAAAGAATTGTTGATTATTTAACCGAAATGAAGGCAAGAGCAGAGAGAGAAGGTACCTCTCTAATGGCAGATGGCAAGCCCGTGGTTGTGAACGAGAAGCAAGTCGAGAAGTTCTTATACACAACACTTAAGCTCAATTCCATAATTTTGAGATACTCAAGAATGGCTGCTGTTGTGTTAGTAAGTCTTCCTCCTCCACCATTGAGCCACCCAGCATATTTCTATATGGAGTATATGGATCTGTTGCTGGAGAATATACCAAGGATTTTGATTGTGAGAGGATATCGTAGAGATGTTGTAACTCTATTCACATAG 2100 0.4214 MTPVNGTTIAIQSPSSHDLQIYGIVVTIVLCFIVFGGVKMINRVAPAFLIPVLFSLVCIYLGILLAKEDHPTEGITGLSLKTIKENWSSDYQKTNDAGIPDPNGSVTWNFNSLVGLFFPAVTGIMAGSNRSSSLRDTQRSIPVGTLSATLVTSIMYLISVIMFGAIATREKLLTDRLLSATVAWPFPSLIKIGIILSTMGAALQSLTGAPRLLAAIANDDILPILNYFKVADGSEPHVATLFTAFLCIGCVIIGNLDLITPTVTMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGALLCVVIMFLISWSFTVVSLALASLIYKYVSIKGKAGDWGDGFKSAYFQLALRSLRSLGANQVHPKNWYPIPLVFCRPWGKLPENVPCHPKLADFANCMKKKGRGMTIFVSILDGDYHECAEDAKTACKQLSTYIEYKNCEGVAEIVVAPNMSVGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTDIPATFVGIINDCIVANKAVVIVKGLDEWPNVYQKQYGTIDLYWIVFCIAEEDADAEGLKADVKKFLYDLRMHAEVFVITMKWDVQVDSGSPQDESLDAFTSANQRIVDYLTEMKARAEREGTSLMADGKPVVVNEKQVEKFLYTTLKLNSIILRYSRMAAVVLVSLPPPPLSHPAYFYMEYMDLLLENIPRILIVRGYRRDVVTLFT 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04220 699 Pfam Amino acid permease 14 360 IPR004841 GO:0016020|GO:0055085
Vifa1g04220 699 FunFam Solute carrier family 12 member 4 344 - -
Vifa1g04220 699 Pfam Solute carrier family 12 537 698 IPR018491 GO:0006811|GO:0016020|GO:0022857
Vifa1g04220 699 Pfam Solute carrier family 12 394 515 IPR018491 GO:0006811|GO:0016020|GO:0022857
Vifa1g04220 699 Gene3D Amino acid/polyamine transporter I 4 342 - -
Vifa1g04220 699 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 537 696 IPR004842 GO:0006811|GO:0015377|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04220 Vifa-Chr1 652696507 652703562 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04220 1 699 Inorganic Solute Cotransporters AT1G30450 79.150 0.0 1194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04220 K14427 - gmx:100795205 1264.98