Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04219 ATGACACCGGTTAATGGTACCACAATTGCAATACAGAGTCCAAGTTCACACGACCTGCAAATTTATGGGATTGTTGTGACTATTGTGTTATGCTTTATTGTATTTGGAGGAGTGAAGATGATAAATCGGGTTGCACCTGCATTTCTTATACCTGTTTTATTCTCACTCGTCTGCATATATTTGGGAATTCTGTTGGCAAAGGAGGATCATCCCACAGAGGGAATTACTGGGTTGAGTTTGAAGACTATTAAAGAAAATTGGAGCTCAGATTATCAAAAGACTAATGATGCTGGAATTCCAGATCCCAATGGTTCTGTAACCTGGAATTTCAATTCTTTGGTGGGCCTTTTTTTCCCAGCAGTGACAGGAATAATGGCAGGTTCTAACCGATCATCTTCTCTGAGAGATACTCAACGATCTATTCCTGTGGGAACTTTATCTGCAACTCTTGTAACTTCTATTATGTATCTTATTTCTGTGATAATGTTTGGCGCCATTGCCACCAGAGAGAAGCTTTTAACTGACAGGTTGCTTTCAGCTACAGTTGCCTGGCCTTTTCCTTCATTAATTAAAATTGGGATTATTCTTTCAACCATGGGTGCTGCTCTTCAGAGCCTGACCGGCGCCCCACGTCTGCTTGCAGCTATAGCCAATGATGATATTTTACCTATTCTAAACTACTTTAAAGTCGCAGATGGTAGCGAGCCACATGTTGCTACCCTTTTTACTGCTTTCCTATGTATTGGGTGTGTCATCATTGGGAATCTGGATCTTATCACTCCAACTGTGACCATGTTTTTCCTTTTGTGTTATTCTGGTGTCAACTTGTCCTGCTTCCTTCTCGATTTACTAGATGCTCCTAGTTGGCGTCCTCGGTGGAAATTTCATCATTGGAGTTTGTCACTTCTAGGAGCATTACTTTGTGTAGTGATCATGTTCCTAATCTCTTGGTCATTCACTGTGGTTTCTTTGGCCCTTGCAAGTCTTATATATAAGTACGTGAGCATCAAAGGAAAAGCTGGGGACTGGGGAGATGGTTTCAAAAGCGCTTATTTCCAACTTGCACTTCGTAGCCTTCGGTCGCTAGGAGCAAATCAAGTGCACCCAAAGAATTGGTATCCAATTCCGCTAGTGTTTTGTCGGCCCTGGGGAAAACTGCCCGAAAATGTTCCCTGTCATCCCAAACTTGCCGACTTCGCTAACTGTATGAAGAAGAAAGGTCGAGGAATGACTATATTTGTCTCCATACTAGACGGGGATTACCATGAATGCGCTGAAGATGCCAAGACAGCTTGTAAACAACTTAGTACCTACATTGAGTACAAGAATTGTGAAGGTGTGGCCGAGATTGTTGTAGCTCCTAACATGTCTGTAGGTTTTCGTGGCATTGTTCAGACAATGGGCCTTGGCAACCTCAAACCGAACATCGTGGTGATGCGTTATCCAGAAATCTGGCGCCGGGAGAACTTAACAGATATCCCTGCCACCTTTGTTGGTATAATTAATGACTGCATTGTTGCAAACAAAGCAGTAGTTATAGTGAAGGGTCTCGATGAATGGCCAAACGTGTACCAGAAGCAATACGAAGAGGATGCAGATGCAGAGGGGCTGAAAGCTGATGTTAAAAAATTCCTTTACGATCTTCGGATGCATGCAGAAGTCTTTGTCATAACAATGAAATGGGATGTACAGGTGGATAGTGGGTCTCCACAAGATGAATCATTAGACGCATTTACCAGTGCTAATCAAAGAATTGTTGATTATTTAACCGAAATGAAGGCAAGAGCAGAGAGAGAAGGTACCTCTCTAATGGCAGATGGCAAGCCCGTGGTTGTGAACGAGAAGCAAGTCGAGAAGTTCTTATACACAACACTTAAGCTCAATTCCATAATTTTGAGATACTCAAGAATGGCTGCTGTTGTGTTAGTAAGTCTTCCTCCTCCACCATTGAGCCACCCAGCATATTTCTATATGGAGTATATGGATCTGTTGCTGGAGAATATACCAAGGATTTTGATTGTGAGAGGATATCGTAGAGATGTTGTAACTCTATTCACATAG 2061 0.4231 MTPVNGTTIAIQSPSSHDLQIYGIVVTIVLCFIVFGGVKMINRVAPAFLIPVLFSLVCIYLGILLAKEDHPTEGITGLSLKTIKENWSSDYQKTNDAGIPDPNGSVTWNFNSLVGLFFPAVTGIMAGSNRSSSLRDTQRSIPVGTLSATLVTSIMYLISVIMFGAIATREKLLTDRLLSATVAWPFPSLIKIGIILSTMGAALQSLTGAPRLLAAIANDDILPILNYFKVADGSEPHVATLFTAFLCIGCVIIGNLDLITPTVTMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGALLCVVIMFLISWSFTVVSLALASLIYKYVSIKGKAGDWGDGFKSAYFQLALRSLRSLGANQVHPKNWYPIPLVFCRPWGKLPENVPCHPKLADFANCMKKKGRGMTIFVSILDGDYHECAEDAKTACKQLSTYIEYKNCEGVAEIVVAPNMSVGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTDIPATFVGIINDCIVANKAVVIVKGLDEWPNVYQKQYEEDADAEGLKADVKKFLYDLRMHAEVFVITMKWDVQVDSGSPQDESLDAFTSANQRIVDYLTEMKARAEREGTSLMADGKPVVVNEKQVEKFLYTTLKLNSIILRYSRMAAVVLVSLPPPPLSHPAYFYMEYMDLLLENIPRILIVRGYRRDVVTLFT 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04219 686 Pfam Solute carrier family 12 394 527 IPR018491 GO:0006811|GO:0016020|GO:0022857
Vifa1g04219 686 Pfam Solute carrier family 12 569 685 IPR018491 GO:0006811|GO:0016020|GO:0022857
Vifa1g04219 686 FunFam Solute carrier family 12 member 4 344 - -
Vifa1g04219 686 Gene3D Amino acid/polyamine transporter I 4 342 - -
Vifa1g04219 686 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 531 683 IPR004842 GO:0006811|GO:0015377|GO:0016020
Vifa1g04219 686 Pfam Amino acid permease 14 360 IPR004841 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04219 Vifa-Chr1 652696507 652703562 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04219 1 686 Inorganic Solute Cotransporters AT1G30450 77.366 0.0 1161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04219 K14427 - gmx:100795205 1231.47