Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04214 ATGGATTGTTTGGCTACAGCGTCTGTTCTTTCTAATTGGTTTACTCCATTTTCTATCATCAATACTAATTCTGCAATTAACTCCAAATTCAGAGCCGGTTTCCATAGAATTTACGGATGCACAGAAGAAAAGTTATGTCTCGCTTTCTCCAGGGATGATTATACAGTTGCAAGGAATGTTGCAATCAAATCAAGCAGAGAAATACCTTATTTGGAAACCCAACAAGAACATGGAACTTGGGAAGATTCTGATAGTGAAGACGAGAGCCTTGGATTTGAAAGTGATGGGGAAGAGACACAGACTTCACAAACTGCCGGTGTTAATATCAATGCACAGGACGAGTATGAGCGTATTAAGAAAGAGGTTGAACAGCTTTTGGAACCTGAAGAAAGAAAAATATTGCAACAAAATATAACTCCTGACTTGGAAAAAATATCGTCTGAAAAATGGAACCCACTGCACTCTCTTGCGTTATCACTGCAAATTTATAGCATGGACCGGCTTCTTGAAAATGGTTACGATATTGATTTCCTCAATAAGGAAGGTCTCACTGCACTTCATAAGGCAATTATAGGTAAAAATGAAGCGGTTATAAGCCATCTTTTACGGAAAGGTGCAAGTCCTCATGTCAAGGATAAGGATGGAGCTACTCCACTTCACTATGCAGTTCAAGTTGGTGCAAAGCAAACTGTGAAATTATTGATTAAATACAACGTTGACGTCAACGTTGCAGATAACCAAGGTTGGACCCCGTTGCATGTTGCCATTCAAAGCCGGAATAGAGATATAGCGAAAATTTTGTTGGTCAATGGTGCAGATAGAATGATGAAAAATAAGGATGGAAAAACAGCATTGGATCTAAGTTTATGTTACGGAAAAGACTTCATGTCTTATGACCTTGCTAGATTACTGAAGGTAGTACCAGCCAACTAA 933 0.388 MDCLATASVLSNWFTPFSIINTNSAINSKFRAGFHRIYGCTEEKLCLAFSRDDYTVARNVAIKSSREIPYLETQQEHGTWEDSDSEDESLGFESDGEETQTSQTAGVNINAQDEYERIKKEVEQLLEPEERKILQQNITPDLEKISSEKWNPLHSLALSLQIYSMDRLLENGYDIDFLNKEGLTALHKAIIGKNEAVISHLLRKGASPHVKDKDGATPLHYAVQVGAKQTVKLLIKYNVDVNVADNQGWTPLHVAIQSRNRDIAKILLVNGADRMMKNKDGKTALDLSLCYGKDFMSYDLARLLKVVPAN 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04214 310 Pfam Ankyrin repeats (3 copies) 197 276 IPR002110 GO:0005515
Vifa1g04214 310 SMART ANK_2a 247 276 IPR002110 GO:0005515
Vifa1g04214 310 SMART ANK_2a 181 210 IPR002110 GO:0005515
Vifa1g04214 310 SMART ANK_2a 148 177 IPR002110 GO:0005515
Vifa1g04214 310 SMART ANK_2a 214 243 IPR002110 GO:0005515
Vifa1g04214 310 ProSiteProfiles Ankyrin repeat region circular profile. 214 246 - -
Vifa1g04214 310 ProSiteProfiles Ankyrin repeat profile. 214 246 IPR002110 GO:0005515
Vifa1g04214 310 ProSiteProfiles Ankyrin repeat profile. 247 279 IPR002110 GO:0005515
Vifa1g04214 310 SUPERFAMILY Ankyrin repeat 139 292 IPR036770 -
Vifa1g04214 310 Gene3D - 216 294 IPR036770 -
Vifa1g04214 310 ProSiteProfiles Ankyrin repeat region circular profile. 181 213 - -
Vifa1g04214 310 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 106 304 - -
Vifa1g04214 310 ProSiteProfiles Ankyrin repeat profile. 181 213 IPR002110 GO:0005515
Vifa1g04214 310 MobiDBLite consensus disorder prediction 72 103 - -
Vifa1g04214 310 ProSiteProfiles Ankyrin repeat region circular profile. 247 273 - -
Vifa1g04214 310 Gene3D - 114 215 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04214 165 288 Ion Channels AT2G25600 28.387 4.85e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04214 - - lja:Lj0g3v0067589.2 421.779