Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04211 ATGCCAAGAACCGGAGAAGTCAAGGGCAAAGATTTTGCGGAACTAATTGCTAGTGGAAGAGAGAAATTGGCTTCAGTTCCTTCTGGTGGAGGAGTTATTGTTGTTTCCGCTGCATCTGCTACCGCACCTGCGGCTGAAGCAAAGGAAGAAAAGAAGGTCGAAGAAAAAGAAGAGTCTGATGATGATATGGGCTTTAAAGTCAAGGGCAAAGATTTTGCGGAACTAATTGCCAGTGGAAGAGAGAAATTGGCTTCAGTTCCTTCTGGTGGAGGAGCTATTGCTGTTTCCGCTGCATCTGCTGCCGCACCTGCGGCTGAAGCAAAGGAAGAAAAGAAGGTCGAAGAAAAAGAAGAGTCTGATGATGATATGGGCTTTAGTTTGTTTGACTAG 390 0.4564 MPRTGEVKGKDFAELIASGREKLASVPSGGGVIVVSAASATAPAAEAKEEKKVEEKEESDDDMGFKVKGKDFAELIASGREKLASVPSGGGAIAVSAASAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04211 129 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 66 129 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vifa1g04211 129 MobiDBLite consensus disorder prediction 43 64 - -
Vifa1g04211 129 Pfam 60s Acidic ribosomal protein 67 128 - -
Vifa1g04211 129 Pfam 60s Acidic ribosomal protein 7 65 - -
Vifa1g04211 129 MobiDBLite consensus disorder prediction 98 129 - -
Vifa1g04211 129 MobiDBLite consensus disorder prediction 45 64 - -
Vifa1g04211 129 MobiDBLite consensus disorder prediction 105 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04211 Vifa-Chr1 650371269 650384005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04211 6 67 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 67.692 4.03e-11 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04211 K02943 - csav:115694745 56.6102