Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04209 ATGTCCAAAGAAAACAACGTGAGTTTAATCTCCAAGGCTTTAGAAAATGGAGCTGCACAATATATTCCAAAACCCTTTTGTGCAGAAGATTTCAAAGATATTTGGAAATATGTTTTGGATGCAAAAAAAGAGAAACTTTTTGTTGAGAGTTTATTTGTAAAAACTGAAGACAAAGAGACATTGAGTCATGATACTAAGAGAAAAAAGAAGGGTTGCAAGAGAAAGTGTATAGATGAATATCAAGGAGAAGAAGAACCTCAAGTTGTTAAGAAACCAAAACTTGTTTGGACAACTTATCTCCACAATCTATTTCTCCTTGCCGTTAAGCAAATTGGATTGGAAAAGGCTGTACCAAAGAAAATTTTAGATATTATGAATATTCCAAACTTAACAAGAGAAAATGTAGCCAGCCATCTACAGAAGTATAGAATATTTCTACACGATGTGGCTGAGAAAGGAATGGTTGGAGGAATATCTCATAGAGCTCTAAGGTCAAGATTTGCATCAAGTTTACCAATGTCATTGGTAAAAGAATTTCAAACCATAAGAACGAATAAACTTCGTACATCGACACCTGAATATTTACAATCATTATCATATCGTGGAAGAGATGAAAACATTGCTCTTAATCCTTACAACCAATTTCCAACACATCGCTTTGATCAGTTCCCTTATGTACAAAAAAGGCTAACTCTTCAAGATTCGGACAAAGTTAGATTTGGAAAATCGAAATTAGAAACCGATTTTGTGAACTATAATGTCCATGGTCAAAACATGTTTGGAGTAAAGCCTTCAAGCCTTTCATTGTTTCATGCAAAAAACTTATTCAATGATGGTGCTTCAACTAGTTTTTCATCATATGGAAGTGGACAAGGATTTAGGCCTTATTCTTCATCTTTCATGACAAGGGATTTGACATTTGGTGACATTAGTTACCAAAATCATGGCTTTATGGGAAATGACTCTTTTAATCATATCAATCATGGTGTGAAAAATCAAAACTTGGCATCTTTGAGTCTAAGTTCTAATATTTTGCCTCAAAATGTTGCTTATGATCCAAGAAACAACAAAAACCCTTTTGGAATTCAAATCAACAATGGATTAGAAACGGTTGGAACTGAAACTATGAATATAAGAGGGTTTAGTAGTGTTGGAAATAGGGTTGATACTACAAATAACAATAGTTTTGGCTTGAATAATAACATTCAAAATAAAAATATGAATGGAAATATTTTGGAAAATGAGAAGAAATATAATGGTTCTACTTTCATCAATAAGAAGGGAGACTTCAACCAAGTGGTTCTTCTTAATAAGCTATATAAAGGTGATTGTATCTCTCCTCCAGCTGAAACCACATCTTGTGTGTTGAACGAGTCATCAATAAATTCAGATCAAAATTCTAATAAGTTGCAAGTACAAGGATATTCAAATGGAGAACCATATGGTAGATTCATTGAAGAAAATGTGTTTAAAACAAGTACCTCGACTATTGATCCTGAATTGAATATGGATCTTATAGAAACTTTGTTTGGTACTATAGAAAACTAG 1548 0.3282 MSKENNVSLISKALENGAAQYIPKPFCAEDFKDIWKYVLDAKKEKLFVESLFVKTEDKETLSHDTKRKKKGCKRKCIDEYQGEEEPQVVKKPKLVWTTYLHNLFLLAVKQIGLEKAVPKKILDIMNIPNLTRENVASHLQKYRIFLHDVAEKGMVGGISHRALRSRFASSLPMSLVKEFQTIRTNKLRTSTPEYLQSLSYRGRDENIALNPYNQFPTHRFDQFPYVQKRLTLQDSDKVRFGKSKLETDFVNYNVHGQNMFGVKPSSLSLFHAKNLFNDGASTSFSSYGSGQGFRPYSSSFMTRDLTFGDISYQNHGFMGNDSFNHINHGVKNQNLASLSLSSNILPQNVAYDPRNNKNPFGIQINNGLETVGTETMNIRGFSSVGNRVDTTNNNSFGLNNNIQNKNMNGNILENEKKYNGSTFINKKGDFNQVVLLNKLYKGDCISPPAETTSCVLNESSINSDQNSNKLQVQGYSNGEPYGRFIEENVFKTSTSTIDPELNMDLIETLFGTIEN 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04209 515 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 79 432 IPR044841 GO:0003700|GO:0006355
Vifa1g04209 515 NCBIfam myb-like DNA-binding domain, SHAQKYF class 91 144 IPR006447 GO:0003677
Vifa1g04209 515 FunFam Two-component response regulator 87 150 - -
Vifa1g04209 515 SUPERFAMILY Homeodomain-like 89 147 IPR009057 -
Vifa1g04209 515 Gene3D - 88 148 - -
Vifa1g04209 515 ProSiteProfiles Response regulatory domain profile. 1 39 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04209 Vifa-Chr1 649737085 649739586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04209 12 167 Response Regulator Gene Family AT5G07210 37.436 3.84e-28 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g04209 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04209 - K14491 psat:127115658 786.178