Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04201 ATGTTTCCAACTAACAACCCTTCCACTTCTTCCAACATATCATTACCAAATTTAGAAATCTCTCCTGAGATGCCAGTTTTCAACGAGGAGGTGCGATTAGCGGCGAGTACACCGAAGAAACGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCAGTGTTCAGGGGTGTGAGGAGGAGGAACTTAGATAAGTGGGTTTGTGAAATGAGAGAGCCCAACAAGAAGACTAAAATTTGGTTAGGGACTTTTCCCACTGCCGAGATGGCTGCCCGAGCCCATGACGTCGCGGCATTAGCACTGAGAGGTCGCAACGCCTGTCTCAACTTTGCAGACTCGGCGTGGCTACTTCCTGTTCCCGCCAGCACCCAGACAAAAGGTATACAAAAGGCGGCTGCACAAGCTGCCGAGGCTTTCAGACCAGACAAGATTTTCATACCAGATAAGGCTTTAACTACCGATGATATTGACACTTCTGTAGCCACATCCGCTGCCACAGAGGAGCAGCTTATGTTTCGTATGGAAGAAGAAGAAGAGAAGGAAGTGTTGAACATTCCAGAGTCCTTGAGAAATATGGCGCTGCTGTCCCCTACACACAGCCTCGGCCATGAGTTTGAGTATCAAGATATTAATACAGACTTTGAAGATGTTGAGGTCTCACTATGGAGTTTTTCTCTTTGA 681 0.4787 MFPTNNPSTSSNISLPNLEISPEMPVFNEEVRLAASTPKKRAGRKKFKETRHPVFRGVRRRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAALALRGRNACLNFADSAWLLPVPASTQTKGIQKAAAQAAEAFRPDKIFIPDKALTTDDIDTSVATSAATEEQLMFRMEEEEEKEVLNIPESLRNMALLSPTHSLGHEFEYQDINTDFEDVEVSLWSFSL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04201 226 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Vifa1g04201 226 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Vifa1g04201 226 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Vifa1g04201 226 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Vifa1g04201 226 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Vifa1g04201 226 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Vifa1g04201 226 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Vifa1g04201 226 FunFam Ethylene-responsive transcription factor 2 53 112 - -
Vifa1g04201 226 PIRSF PTI6 124 225 IPR017392 GO:0003700
Vifa1g04201 226 PIRSF PTI6 17 161 IPR017392 GO:0003700
Vifa1g04201 226 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Vifa1g04201 226 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 19 223 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04201 Vifa-Chr1 648753731 648754411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04201 32 224 AP2-EREBP Transcription Factor Family AT4G25470 55.838 4.52e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa1g04201 AP2 2.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04201 - K09286 psat:127130221 357.836