Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04200 ATGTTTCCAACTAACAACCCTTCCACTTCTTCCAACATATCATTACCAAATTTAGAAATCTCTCCTGAGATGCCAGTTTTCAACGAGGAGGTGCGATTAGCGGCGAGTACACCGAAGAAACGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCAGTGTTCAGAGATGGCTGCCGAGCCCATGACGTCGCGGCATTAGCACTGAGAGGTCGCAACGCCTGTCTCAACTTTGCAGACTCGGCGTGGCTACTTCCTGTTCCCGCCAGCACCCAGACAAAAGGTATACAAAAGGCGGCTGCACTAGCTGCCGAGGCTTTCAGACCAGACAAGATTTTCAGACCAGACAAGGCTTTAACTACTGATGATATTGACACTTCTGTAGCCACATCCGCTGCCACAGAGGAGCAGCTTATGTTTCGTATGGAAGAAGAAGAAGAGAAGGAAGTGTTGAACATTCCAGAGTCCTTGAGAAATATGGCGCTGCTGTCCCCTACAAACAGCCTCGGGCATGAGTTTGAGTATCAAGATATTAATACTGACTTTGAAGATGTTGAGGTCTCACTATGGAGTTTTTCTCTTTGA 585 0.4803 MFPTNNPSTSSNISLPNLEISPEMPVFNEEVRLAASTPKKRAGRKKFKETRHPVFRDGCRAHDVAALALRGRNACLNFADSAWLLPVPASTQTKGIQKAAALAAEAFRPDKIFRPDKALTTDDIDTSVATSAATEEQLMFRMEEEEEKEVLNIPESLRNMALLSPTNSLGHEFEYQDINTDFEDVEVSLWSFSL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04200 194 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 19 56 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04200 Vifa-Chr1 648745853 648746532 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04200 32 192 AP2-EREBP Transcription Factor Family AT4G25470 40.594 7.11e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04200 - - psat:127130221 279.641