Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04184 ATGGATATGTTTACTACAAACAACTCTTGTTCTTCCTGTGACACTTCACTGCAGAATTCAGATGGCTCTCATTGGATGTTCGTATCAAATGAAGAAATACGGTTAGCTGCAACTACCCCGAAGAAACGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCATCCGGTGTATAGGGGTGTGAGGAGAAGAAACAATAATAAATGGGTGTGTGAAATGAGAGAGCCTAACAAAAAGACTAAGATTTGGCTAGGCACTTTTCCAACGGTCGAGATGGCTGCCCGAGCACACGATGTTGCTGCAATGGCATTAAGGGGCCGCTACGCCTGTCTCAATTTTGCAGACTCAACGTGGCGGCTCCCTAAACCAGTTAGTTCTGAGGCAAAAGATATACAAAAGGCTGCTGCAGAAGCCGCCGAGGCTTTCAGACCAGAAAAGATTTTAATGACTAACGACATTGAAAAGATTTTAACGAATAATGACGTTGACGTTGAAACGGCTGTAGCTGCCTCCGCCACAGTGGAGCAGATTTTGCATTGCATGGTAGAGGAAGAAGACAGAGTGATGAGCATGCCAGAGATGTGGAGGAGTATGGCACTAATGTCCCCAACACACAGTTTTGGATATCATGATGAGTTTCAATATATTGATGAACAAGACTATCAAGATCAAGAGATATCACTATGGACTTTTTAA 693 0.4416 MDMFTTNNSCSSCDTSLQNSDGSHWMFVSNEEIRLAATTPKKRAGRKKFKETRHPVYRGVRRRNNNKWVCEMREPNKKTKIWLGTFPTVEMAARAHDVAAMALRGRYACLNFADSTWRLPKPVSSEAKDIQKAAAEAAEAFRPEKILMTNDIEKILTNNDVDVETAVAASATVEQILHCMVEEEDRVMSMPEMWRSMALMSPTHSFGYHDEFQYIDEQDYQDQEISLWTF 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04184 230 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
Vifa1g04184 230 SUPERFAMILY DNA-binding domain 56 115 IPR016177 GO:0003677
Vifa1g04184 230 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
Vifa1g04184 230 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Vifa1g04184 230 FunFam Ethylene-responsive transcription factor 2 55 114 - -
Vifa1g04184 230 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 229 IPR045277 GO:0003700
Vifa1g04184 230 CDD AP2 57 115 IPR001471 GO:0003700|GO:0006355
Vifa1g04184 230 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Vifa1g04184 230 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Vifa1g04184 230 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04184 Vifa-Chr1 646431924 646432616 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04184 34 230 AP2-EREBP Transcription Factor Family AT4G25470 53.234 1.10e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g04184 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04184 - K09286 mtr:25497250 280.796