Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g04182 | ATGGATATCTTTACTACAAACAACTCTTCTTGTTGTTCTTATGACACTTCATTGCAGAATTCAGATGGCTCTCATTGGATGTCAGTATCAAATGAAGAAATACGGTTAGCTGCGAGTACCCCGAAGAAACGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCATCCGGTGTATAGGGGTGTGAGGAGAAGAAACAATAATAAATGGGTGTGTGAAATGAGAGAGCCTAACAAGAAGACTAAGATTTGGTTAGGCACTTTTCCAACGGTCGAGATGGCTGCCCGAGCACACGATGTTGCTGCAATGGCATTAAGGGGCCGCTACGCCTGTCTCAATTTTGCAGACTCAATGTGGCGGCTCCCTAAACCAGTTAGTTCTGAGGCAAAAGATATACAAAAGGCCGCTGCAGAAGCCGCCGAGGCTTTCAGACCAGAAAAGATTTTAATGACTAACGACATTGAAAAGATTTTAATGACGAATAATGACGTTGACGTTGAAACGGCTGTAGCTGCCTCCGCCACAGTGGAGCAGATTTTGCATTGCATGGTAGAGGAAGAAGACAGAGTGATGAGCATGCCAGAGATGTGGAGGAGTATGGCACTAATGTCCCCAATACACAGTTTTGGGTATCATGATGAGTATCAATATATTGATGAACAAGACTATCAAGATCAAGAGATATCACTATGGACTTTTTAA | 699 | 0.4378 | MDIFTTNNSSCCSYDTSLQNSDGSHWMSVSNEEIRLAASTPKKRAGRKKFKETRHPVYRGVRRRNNNKWVCEMREPNKKTKIWLGTFPTVEMAARAHDVAAMALRGRYACLNFADSMWRLPKPVSSEAKDIQKAAAEAAEAFRPEKILMTNDIEKILMTNNDVDVETAVAASATVEQILHCMVEEEDRVMSMPEMWRSMALMSPIHSFGYHDEYQYIDEQDYQDQEISLWTF | 232 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g04182 | 232 | CDD | AP2 | 58 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa1g04182 | 232 | Pfam | AP2 domain | 56 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa1g04182 | 232 | SUPERFAMILY | DNA-binding domain | 57 | 116 | IPR016177 | GO:0003677 | |
Vifa1g04182 | 232 | PRINTS | Ethylene responsive element binding protein signature | 58 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa1g04182 | 232 | PRINTS | Ethylene responsive element binding protein signature | 80 | 96 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa1g04182 | 232 | ProSiteProfiles | AP2/ERF domain profile. | 57 | 114 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa1g04182 | 232 | FunFam | Ethylene-responsive transcription factor 2 | 56 | 115 | - | - | |
Vifa1g04182 | 232 | Gene3D | AP2/ERF domain | 57 | 115 | IPR036955 | GO:0003700|GO:0006355 | |
Vifa1g04182 | 232 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 17 | 231 | IPR045277 | GO:0003700 | |
Vifa1g04182 | 232 | SMART | rav1_2 | 57 | 120 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g04182 | Vifa-Chr1 | 646417751 | 646418449 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g04182 | 35 | 232 | AP2-EREBP Transcription Factor Family | AT4G25470 | 53.465 | 1.13e-63 | 196 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Vifa1g04182 | AP2 | 1.3e-14 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g04182 | - | K09286 | mtr:25497250 | 273.863 |