Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04180 ATGGATATCTTTACTACAAACAACTCTTCTTGTTCTTCTTCTGACACTTCATTGCAGAATTCAGATGGCTCTCATTGGATGTCAGTATCAAATGAAGAAATACGGTTAGCTGCGAGTACCCCGAAGAAACGTGCAGGGAGGAAGAAGTTCAAGGAGACCCGCCATCCGGTGTATAGGGGTGTGAGGAGAAGAAACAATAATAAATGGGTGTGTGAAATGAGAGAGCCTAACAAAAAGACTAAGATTTGGTTAGGCACTTTTCCAACGGTCGAGATGGCTGCCCGAGCACACGATGTTGCTGCAATGGCATTAAGGGGCCGCTACGCCTGTCTCAATTTTGCAGACTCAACGTGGCGGCTCCCTAAACCAGTTAGTTCTGAGGCAAAAGATATACAAAAGGCCGCTGCAGAAGCCGCCGAGGCTTTCAGACCAGAAAAGATTTTAATGAGTAACGACATTGAAAAGATTTTAATGACGAATAATGACGTTGACGTTGAAACGGCTGTAGCTGCCTCCGCCACAGTGGAGCAGATTTTGCATTGCATGGTAGAGGAAGAAGACAGAGTGATGAGCATGCCAGAGATGTGGAGGAGTATGGCACTAATGTCCCCAATACACAGTTTTGGGTATCATGATGAGTATCAATATATTGATGAACAAGACTATCAAGATCAAGAGATATCACTATGGACTTTTTAA 699 0.4406 MDIFTTNNSSCSSSDTSLQNSDGSHWMSVSNEEIRLAASTPKKRAGRKKFKETRHPVYRGVRRRNNNKWVCEMREPNKKTKIWLGTFPTVEMAARAHDVAAMALRGRYACLNFADSTWRLPKPVSSEAKDIQKAAAEAAEAFRPEKILMSNDIEKILMTNNDVDVETAVAASATVEQILHCMVEEEDRVMSMPEMWRSMALMSPIHSFGYHDEYQYIDEQDYQDQEISLWTF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04180 232 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
Vifa1g04180 232 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Vifa1g04180 232 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Vifa1g04180 232 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 231 IPR045277 GO:0003700
Vifa1g04180 232 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Vifa1g04180 232 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Vifa1g04180 232 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Vifa1g04180 232 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g04180 232 FunFam Ethylene-responsive transcription factor 2 56 115 - -
Vifa1g04180 232 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Vifa1g04180 232 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04180 Vifa-Chr1 646395620 646396318 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04180 35 232 AP2-EREBP Transcription Factor Family AT4G25470 52.970 1.60e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g04180 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04180 - - mtr:25497250 266.159