Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04179 ATGGATATCTTTACTACAAACAACTCTTCTTGTTGTTCTTCTGACACTTCATTGCAGAATTCAGATGACTCTCATTGGATGTTCGTATCAAATGAAGAAATACGGTTAGCTGCGAGTACCCCGAAGAAACGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGTCATCCGGTGTATAGGGGTGTGAGGAGAAGAAACAATAATAAATGGGTGTGTGAAATGAGAGAGCCTAACAAGAAGACTAAGATTTGGTTAGGGACATTTCCAACGGTCGAGATGGCTGCCCGAGCACACGATGTTGCTGCAATGGCATTAAGGGGCCGCTACGCCTGTCTCAATTTTGCAGACTCAACATGGCGGCTCCCTAAACCCGCCACCACTCAGGCAAAAGATATACAAAAGGCCGCTGCAGAAGCCGCTGAGGCTTTCAGACCAGAAAAGATTTTAGTGACTAACGAAGTTGAAAAGATTTCAACGACTAACGACGTTGACATTGAAACGGCTGTGGCTGCCTCCGCCACAGTGGAGCAGATTATGCAGTGCATGGTAGAGGAAGAAGACGAAGATATGAGCATGCCAGAGATGTGGAGGAATATGGCTCTAATGTCCCCAACACATAGTTTTGGATATCATGATCAAGAGTTTCAATATATTGATGAACAAGACTATCAAGATCAAGAGATATCATTATGGACTTTCTAA 699 0.4435 MDIFTTNNSSCCSSDTSLQNSDDSHWMFVSNEEIRLAASTPKKRAGRKKFKETRHPVYRGVRRRNNNKWVCEMREPNKKTKIWLGTFPTVEMAARAHDVAAMALRGRYACLNFADSTWRLPKPATTQAKDIQKAAAEAAEAFRPEKILVTNEVEKISTTNDVDIETAVAASATVEQIMQCMVEEEDEDMSMPEMWRNMALMSPTHSFGYHDQEFQYIDEQDYQDQEISLWTF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04179 232 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g04179 232 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
Vifa1g04179 232 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Vifa1g04179 232 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Vifa1g04179 232 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Vifa1g04179 232 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Vifa1g04179 232 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 9 231 IPR045277 GO:0003700
Vifa1g04179 232 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Vifa1g04179 232 FunFam Ethylene-responsive transcription factor 2 56 115 - -
Vifa1g04179 232 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Vifa1g04179 232 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04179 Vifa-Chr1 646379544 646380242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04179 35 232 AP2-EREBP Transcription Factor Family AT5G51990 51.980 2.41e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa1g04179 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04179 - K09286 mtr:25497250 273.478