Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g04174 | ATGAAGCAGTCTTTTAATCCTTCATCTTTTGGTCCTTCCAAGATTCCACCTATTAATGCACCTGGAAAATCAGAACATGGTGCGTTGGAAGTTTTATCTGGATCTGATGCATACCGTGCTTCTTCTGATGCCAGCCTCTTTTCTAGCTCATTACCTGTTCTTCCACATGAAAAATTGAACATAAATGAAACTGAAAACGGTTTTCAAACTATAGATGACATATCAACTGGTTTTAAAAAGCTTCATCAAGAGGTAGAGCTCAATGGGTCCCTTGAGGATGGTAATAATAATGCAACTGGAGCCATGCTTCCTGATGATGATGATGAGCTTTTGGCCGGCATATTGGATGACTTTGACCTTAGTGGTTTACCTGGTTCCCTTGAGGACTTGGAAGAATATGATATTTTTGGTAGTGGTGGAGGTTTGGAACTTGAAACTGATACACAGGAAAGTCTAAGTGTGGGAGTATCTAAGTTAAGCTTCTCTGATAGCTCTTCCAGCAATGGTTTTCCCCCTTATTCTCTTCCTAATGGGGTCGGAAGTGGAGCCGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTGTTTGTTCGAAATATTAACAGTAATGTGGAGGATACTGAGCTGCGAACTCTTTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCATGTAAACACAGGGGATTTGTGATGATATCGTATTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCATTGCGGCGAAGGAAACTCGACATTCACTTTTCAATACCAAAGGATAATCCATCAGACAAGGATATCAATCAAGGAACCTTGGTAGCTTTCAATTTGGATCCATCGGTTTCAAATGAGGACCTTCGCCAAATATTTGGGGCTTACGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGACATCATAAGTTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCACTTAAATTATTAAATAGGAGTGATATAGCTGGTAAACGCATAAAGCTTGAACCAAGTCGGCCTGGAGGAGCTCGTCGCAATTTGATGCTCCAACTTAATCAAGAGCTTGACCAAGACGAGTCTCGAAGTTTTAGATATCAAGTGGGTTCACCTCTAGCCAGCTCTCCGCCAGGTAATTGGTTACAGTTCAACAGCCCTGTCGAGCAGAGTTCATTGCCAACTATTAATCATTCTCCCAGTTCTAGTATCATGAGCCCTACAACAGGCGGGCATTTATCTGGGCTAGCTTCAATTTTGCAACCACAGACGTCGGACACAGTTAAGGCCGCAACTATTGGCAAGAACATAGGAAGGAGTAGTCATGGAGACCACATATTTACCAATACGAGTTCATCCTCTGGATCTACTTTCAACTCACATTCACTTCCAGAGCCAAAATTTAGTCAATATCGCGGGACTTTGTCCTCGTTTGGTACATCAACATCAAATGGGTCTTCAGTGGAAACCTTGACCGCTCCACAGTTTCTATGGGGAAGTCCAAACTTATCTTCACCACAAACCAAACCTTCAGCTTGGCCTAAACCATCAGTGGGACATCAACTCAGTACATCAAATGGAACAAGTCACGCTTTCCCATACTCAAGTCGCAGCAATTCCTTTGTCAATTTGTCCCAACAACATCACCATCATCATGTTGGTTCTGCTCCGTCACGTTTGCCTTTTCAGAGGCACTTTGGTTTTTTCCCCAAGTCATCTGAAACTTCATTGATGAATAATGTTGGCTATAGTGGCATGAGTCTAGGGCACACGCTTAATGCTGGTGTTTCGATTCCACGAAATATGCCTGATAATGGTTCATCAAACTTCAGAATGAGATCTCCTATACTCAGCCCTGTATTTTTGGGTAATGGTCCTTATCCAGGATTGCTACCTACTGCTATGGAGAGTTTTACCGACCATGTTAGCAGTAGATGGATCGATAACAATGGAAGCCAAGTTGACAGCAAGAAGCTATTTCAGCTCGACTTGGATAAGATCAGATGTGGTGAAGATACAAGGACTACATTGATGATAAAGAATATCCCAAATAAATACACCTCGAAAATGTTGTTAGCTGCCATTGATGAAACTCAGAAGGGCACCTATGATTTTCTCTACCTGCCAATTGACTTTAAGAATAAATGCAATGTGGGTTATGCATTTATCAACATGCTGTCACCTTCACTCATTATTCCATTCTACGAGTCATTCAATGGGAAGAAGTGGGAGAAGTTCAATAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGGAAGAATGCTCTTGTGAACCATTTTCAAAATTCTAGTTTGATGAATGAAGATAAGCGCTGCCGACCTATTGTTTTCCACCCTGATGGTTCTGAAGCCGTTGATCAGGTCATACAAGAGAGTTTCCCCTCCTACTATAGCAATATTCAGGAAGTTAAGCCAAGTGAATTTCAGTTAAGTGATTCGCTCGGATTCCCTTCAAAGGATGGCCTTCCTATGAGTTTGGATGCAAGTTAA | 2553 | 0.4179 | MKQSFNPSSFGPSKIPPINAPGKSEHGALEVLSGSDAYRASSDASLFSSSLPVLPHEKLNINETENGFQTIDDISTGFKKLHQEVELNGSLEDGNNNATGAMLPDDDDELLAGILDDFDLSGLPGSLEDLEEYDIFGSGGGLELETDTQESLSVGVSKLSFSDSSSSNGFPPYSLPNGVGSGAVAGEHPYGEHPSRTLFVRNINSNVEDTELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVAFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKLLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPLASSPPGNWLQFNSPVEQSSLPTINHSPSSSIMSPTTGGHLSGLASILQPQTSDTVKAATIGKNIGRSSHGDHIFTNTSSSSGSTFNSHSLPEPKFSQYRGTLSSFGTSTSNGSSVETLTAPQFLWGSPNLSSPQTKPSAWPKPSVGHQLSTSNGTSHAFPYSSRSNSFVNLSQQHHHHHVGSAPSRLPFQRHFGFFPKSSETSLMNNVGYSGMSLGHTLNAGVSIPRNMPDNGSSNFRMRSPILSPVFLGNGPYPGLLPTAMESFTDHVSSRWIDNNGSQVDSKKLFQLDLDKIRCGEDTRTTLMIKNIPNKYTSKMLLAAIDETQKGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYESFNGKKWEKFNSEKVASLAYARIQGKNALVNHFQNSSLMNEDKRCRPIVFHPDGSEAVDQVIQESFPSYYSNIQEVKPSEFQLSDSLGFPSKDGLPMSLDAS | 850 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g04174 | 850 | MobiDBLite | consensus disorder prediction | 448 | 477 | - | - | |
Vifa1g04174 | 850 | FunFam | MEI2-like protein 5 isoform 2 | 185 | 279 | - | - | |
Vifa1g04174 | 850 | MobiDBLite | consensus disorder prediction | 454 | 477 | - | - | |
Vifa1g04174 | 850 | SUPERFAMILY | RNA-binding domain, RBD | 688 | 773 | IPR035979 | GO:0003676 | |
Vifa1g04174 | 850 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 281 | 354 | IPR000504 | GO:0003723 | |
Vifa1g04174 | 850 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Vifa1g04174 | 850 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 196 | 269 | IPR000504 | GO:0003723 | |
Vifa1g04174 | 850 | MobiDBLite | consensus disorder prediction | 513 | 543 | - | - | |
Vifa1g04174 | 850 | SUPERFAMILY | RNA-binding domain, RBD | 193 | 356 | IPR035979 | GO:0003676 | |
Vifa1g04174 | 850 | CDD | RRM1_MEI2_like | 195 | 271 | IPR034453 | - | |
Vifa1g04174 | 850 | Gene3D | - | 185 | 280 | IPR012677 | - | |
Vifa1g04174 | 850 | Pfam | RNA recognition motif 2 | 686 | 782 | IPR007201 | - | |
Vifa1g04174 | 850 | CDD | RRM3_MEI2_like | 689 | 774 | IPR034454 | - | |
Vifa1g04174 | 850 | SMART | rrm1_1 | 282 | 350 | IPR000504 | GO:0003723 | |
Vifa1g04174 | 850 | SMART | rrm1_1 | 688 | 764 | IPR000504 | GO:0003723 | |
Vifa1g04174 | 850 | SMART | rrm1_1 | 197 | 265 | IPR000504 | GO:0003723 | |
Vifa1g04174 | 850 | Gene3D | - | 281 | 379 | IPR012677 | - | |
Vifa1g04174 | 850 | FunFam | Protein MEI2-like 1 | 280 | 375 | - | - | |
Vifa1g04174 | 850 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 44 | 804 | - | - | |
Vifa1g04174 | 850 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 287 | 348 | IPR000504 | GO:0003723 | |
Vifa1g04174 | 850 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 198 | 262 | IPR000504 | GO:0003723 | |
Vifa1g04174 | 850 | CDD | RRM2_MEI2_like | 280 | 350 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g04174 | Vifa-Chr1 | 645538040 | 645542505 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g04174 | 191 | 389 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 25.561 | 5.89e-06 | 48.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g04174 | - | - | gmx:100787152 | 1334.7 |