Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04174 ATGAAGCAGTCTTTTAATCCTTCATCTTTTGGTCCTTCCAAGATTCCACCTATTAATGCACCTGGAAAATCAGAACATGGTGCGTTGGAAGTTTTATCTGGATCTGATGCATACCGTGCTTCTTCTGATGCCAGCCTCTTTTCTAGCTCATTACCTGTTCTTCCACATGAAAAATTGAACATAAATGAAACTGAAAACGGTTTTCAAACTATAGATGACATATCAACTGGTTTTAAAAAGCTTCATCAAGAGGTAGAGCTCAATGGGTCCCTTGAGGATGGTAATAATAATGCAACTGGAGCCATGCTTCCTGATGATGATGATGAGCTTTTGGCCGGCATATTGGATGACTTTGACCTTAGTGGTTTACCTGGTTCCCTTGAGGACTTGGAAGAATATGATATTTTTGGTAGTGGTGGAGGTTTGGAACTTGAAACTGATACACAGGAAAGTCTAAGTGTGGGAGTATCTAAGTTAAGCTTCTCTGATAGCTCTTCCAGCAATGGTTTTCCCCCTTATTCTCTTCCTAATGGGGTCGGAAGTGGAGCCGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTGTTTGTTCGAAATATTAACAGTAATGTGGAGGATACTGAGCTGCGAACTCTTTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCATGTAAACACAGGGGATTTGTGATGATATCGTATTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCATTGCGGCGAAGGAAACTCGACATTCACTTTTCAATACCAAAGGATAATCCATCAGACAAGGATATCAATCAAGGAACCTTGGTAGCTTTCAATTTGGATCCATCGGTTTCAAATGAGGACCTTCGCCAAATATTTGGGGCTTACGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGACATCATAAGTTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCACTTAAATTATTAAATAGGAGTGATATAGCTGGTAAACGCATAAAGCTTGAACCAAGTCGGCCTGGAGGAGCTCGTCGCAATTTGATGCTCCAACTTAATCAAGAGCTTGACCAAGACGAGTCTCGAAGTTTTAGATATCAAGTGGGTTCACCTCTAGCCAGCTCTCCGCCAGGTAATTGGTTACAGTTCAACAGCCCTGTCGAGCAGAGTTCATTGCCAACTATTAATCATTCTCCCAGTTCTAGTATCATGAGCCCTACAACAGGCGGGCATTTATCTGGGCTAGCTTCAATTTTGCAACCACAGACGTCGGACACAGTTAAGGCCGCAACTATTGGCAAGAACATAGGAAGGAGTAGTCATGGAGACCACATATTTACCAATACGAGTTCATCCTCTGGATCTACTTTCAACTCACATTCACTTCCAGAGCCAAAATTTAGTCAATATCGCGGGACTTTGTCCTCGTTTGGTACATCAACATCAAATGGGTCTTCAGTGGAAACCTTGACCGCTCCACAGTTTCTATGGGGAAGTCCAAACTTATCTTCACCACAAACCAAACCTTCAGCTTGGCCTAAACCATCAGTGGGACATCAACTCAGTACATCAAATGGAACAAGTCACGCTTTCCCATACTCAAGTCGCAGCAATTCCTTTGTCAATTTGTCCCAACAACATCACCATCATCATGTTGGTTCTGCTCCGTCACGTTTGCCTTTTCAGAGGCACTTTGGTTTTTTCCCCAAGTCATCTGAAACTTCATTGATGAATAATGTTGGCTATAGTGGCATGAGTCTAGGGCACACGCTTAATGCTGGTGTTTCGATTCCACGAAATATGCCTGATAATGGTTCATCAAACTTCAGAATGAGATCTCCTATACTCAGCCCTGTATTTTTGGGTAATGGTCCTTATCCAGGATTGCTACCTACTGCTATGGAGAGTTTTACCGACCATGTTAGCAGTAGATGGATCGATAACAATGGAAGCCAAGTTGACAGCAAGAAGCTATTTCAGCTCGACTTGGATAAGATCAGATGTGGTGAAGATACAAGGACTACATTGATGATAAAGAATATCCCAAATAAATACACCTCGAAAATGTTGTTAGCTGCCATTGATGAAACTCAGAAGGGCACCTATGATTTTCTCTACCTGCCAATTGACTTTAAGAATAAATGCAATGTGGGTTATGCATTTATCAACATGCTGTCACCTTCACTCATTATTCCATTCTACGAGTCATTCAATGGGAAGAAGTGGGAGAAGTTCAATAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGGAAGAATGCTCTTGTGAACCATTTTCAAAATTCTAGTTTGATGAATGAAGATAAGCGCTGCCGACCTATTGTTTTCCACCCTGATGGTTCTGAAGCCGTTGATCAGGTCATACAAGAGAGTTTCCCCTCCTACTATAGCAATATTCAGGAAGTTAAGCCAAGTGAATTTCAGTTAAGTGATTCGCTCGGATTCCCTTCAAAGGATGGCCTTCCTATGAGTTTGGATGCAAGTTAA 2553 0.4179 MKQSFNPSSFGPSKIPPINAPGKSEHGALEVLSGSDAYRASSDASLFSSSLPVLPHEKLNINETENGFQTIDDISTGFKKLHQEVELNGSLEDGNNNATGAMLPDDDDELLAGILDDFDLSGLPGSLEDLEEYDIFGSGGGLELETDTQESLSVGVSKLSFSDSSSSNGFPPYSLPNGVGSGAVAGEHPYGEHPSRTLFVRNINSNVEDTELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVAFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKLLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPLASSPPGNWLQFNSPVEQSSLPTINHSPSSSIMSPTTGGHLSGLASILQPQTSDTVKAATIGKNIGRSSHGDHIFTNTSSSSGSTFNSHSLPEPKFSQYRGTLSSFGTSTSNGSSVETLTAPQFLWGSPNLSSPQTKPSAWPKPSVGHQLSTSNGTSHAFPYSSRSNSFVNLSQQHHHHHVGSAPSRLPFQRHFGFFPKSSETSLMNNVGYSGMSLGHTLNAGVSIPRNMPDNGSSNFRMRSPILSPVFLGNGPYPGLLPTAMESFTDHVSSRWIDNNGSQVDSKKLFQLDLDKIRCGEDTRTTLMIKNIPNKYTSKMLLAAIDETQKGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYESFNGKKWEKFNSEKVASLAYARIQGKNALVNHFQNSSLMNEDKRCRPIVFHPDGSEAVDQVIQESFPSYYSNIQEVKPSEFQLSDSLGFPSKDGLPMSLDAS 850
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04174 850 MobiDBLite consensus disorder prediction 448 477 - -
Vifa1g04174 850 FunFam MEI2-like protein 5 isoform 2 185 279 - -
Vifa1g04174 850 MobiDBLite consensus disorder prediction 454 477 - -
Vifa1g04174 850 SUPERFAMILY RNA-binding domain, RBD 688 773 IPR035979 GO:0003676
Vifa1g04174 850 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 354 IPR000504 GO:0003723
Vifa1g04174 850 MobiDBLite consensus disorder prediction 1 27 - -
Vifa1g04174 850 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 269 IPR000504 GO:0003723
Vifa1g04174 850 MobiDBLite consensus disorder prediction 513 543 - -
Vifa1g04174 850 SUPERFAMILY RNA-binding domain, RBD 193 356 IPR035979 GO:0003676
Vifa1g04174 850 CDD RRM1_MEI2_like 195 271 IPR034453 -
Vifa1g04174 850 Gene3D - 185 280 IPR012677 -
Vifa1g04174 850 Pfam RNA recognition motif 2 686 782 IPR007201 -
Vifa1g04174 850 CDD RRM3_MEI2_like 689 774 IPR034454 -
Vifa1g04174 850 SMART rrm1_1 282 350 IPR000504 GO:0003723
Vifa1g04174 850 SMART rrm1_1 688 764 IPR000504 GO:0003723
Vifa1g04174 850 SMART rrm1_1 197 265 IPR000504 GO:0003723
Vifa1g04174 850 Gene3D - 281 379 IPR012677 -
Vifa1g04174 850 FunFam Protein MEI2-like 1 280 375 - -
Vifa1g04174 850 PANTHER RNA RECOGNITION MOTIF-CONTAINING 44 804 - -
Vifa1g04174 850 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 348 IPR000504 GO:0003723
Vifa1g04174 850 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 262 IPR000504 GO:0003723
Vifa1g04174 850 CDD RRM2_MEI2_like 280 350 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa1g04174 Vifa-Chr1 645538040 645542505 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04174 191 389 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 5.89e-06 48.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04174 - - gmx:100787152 1334.7