Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04173 ATGTTTCCAACTAACAACTCTCCCACTTCACATCCAAGTTCCTCAAAACCTTCTACTTCCTCAAACATGCCATTGCCGAATTTGGAAATCCCTCATGACATGTCAGTTTTCAACGATGAACTTCGACTAGCCGAGAGTACCCCGAAGAAGCCTGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCGGTGTTCAGGGGTGTGAGGAGGAGGAATTTAGATAAGTGGGTGTGTGAAATGAGGGAACCTAACAAGAAGACTAAAATTTGGTTAGGGACCTATCCAACCGCCGAGATGGCAGCCCGAGCCCACGATGTTGCGGCATTGGCATTGAGAGGTCGCACCGCCTGTCTCAACTTTGCAGACTCGGCGAGGCGACTTCCCATTCCTACCACTACCGCGACTAAAGATATTCAAAAGGCGGCTGCAGAAGCCGCCGAGGCTTTTAGACCAGACAAGATTTTGCTAACTAATGACAATGGCATTGACACGGCTGTAGTCGCCGCCACGGAGGAGCAACTTATGTTTGGAATGGAAGAAGAAGAGGAGGAAGAGGTGAACATTCCAGAGTCTTTGAGAAATATGGCGCTATTGTCTCCTACACATAGTTTGGAGAATGAGTTTCATTATAATGATGCAGAACTTCAAGATGTTGAGGTGTCACTATGGAGCTTTTCCCTTTGA 684 0.4795 MFPTNNSPTSHPSSSKPSTSSNMPLPNLEIPHDMSVFNDELRLAESTPKKPAGRKKFKETRHPVFRGVRRRNLDKWVCEMREPNKKTKIWLGTYPTAEMAARAHDVAALALRGRTACLNFADSARRLPIPTTTATKDIQKAAAEAAEAFRPDKILLTNDNGIDTAVVAATEEQLMFGMEEEEEEEVNIPESLRNMALLSPTHSLENEFHYNDAELQDVEVSLWSFSL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04173 227 MobiDBLite consensus disorder prediction 1 26 - -
Vifa1g04173 227 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Vifa1g04173 227 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g04173 227 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Vifa1g04173 227 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Vifa1g04173 227 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Vifa1g04173 227 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Vifa1g04173 227 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Vifa1g04173 227 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 224 IPR045277 GO:0003700
Vifa1g04173 227 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Vifa1g04173 227 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
Vifa1g04173 227 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04173 Vifa-Chr1 644970277 644970960 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04173 42 225 AP2-EREBP Transcription Factor Family AT4G25470 56.477 1.97e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g04173 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04173 - K09286 psat:127130221 308.531