Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04167 ATGTTCCCATCTGTTAGAACCATAGCTCTACACTCATCTTCACTATGCACAGTCTCATCAGATAAACTATCATCACCATCACCACCACCACCTTCATCAATTCCCAAACCAAACCCAACCCATTTAACTCCCAAACCCAAAAGTCTCCTCCAAAACCACCCTCTCTACACACCAACTCATGAAAAACTCTCCCTTCAATTCAAAGAAAAAATCCTATGTCTTGAAGTAATGGGCATTGATTCAGGTAAAGCACTTTCCGAAAACCCTACCCTTCACACTGCTTCCTTAGAATCCATTCACTCCATTATCTCCTTCCTTGTCTCCAAAGGAATCCAACATAAAGACCTTCCTAGAATCTTTGGCATGTGTCCAAAGATTCTCACTTCAAGCATCAAAACTGATCTCAGCCCAGTTTTTGATTTTCTTGTGCATGATCTCAAAGTGCCTGATCATAGCTTTAGAAAAGTTGTGAACAAGTGTCCAAGGTTGCTTACTTCTAGTGTGGTGGATCAGCTTAAACCAGCTTTGTTTTATTTAAGGAGATTAGGGTTAAGAGATTTAGAGGCTTTGGCTTATCAAGATTGTGTGCTTTTGGTTTCCAATGTTGAGAGGACACTAATACCTAAGCTTAAGCATTTGGAGAGTATGGGATTTAGTAAAGAAGAGGTTAGGTGTATGGTTTTGAGGTGTCCTACATTGTTGACTTTTAGTATTGAGAATAATTTTCAGCCAAAGTTTGAGTATTTTTCTGCGGAAATGGGAGGGAAAATGGAGGAGTTGAGAGAGTTTCCTCAGTATTTCTCTTTTAGTTTGGAGAATAGGATCAAAGTTAGATACATGGAGGTTGTTAATAGTGGGGTCAATTTGCCTTTGTCATTGATGCTTAAAAGTACTGATGATGAGTTTAGGGAGTTGATAGAGAAAGGGGTTGGAGGTGGATGA 942 0.3949 MFPSVRTIALHSSSLCTVSSDKLSSPSPPPPSSIPKPNPTHLTPKPKSLLQNHPLYTPTHEKLSLQFKEKILCLEVMGIDSGKALSENPTLHTASLESIHSIISFLVSKGIQHKDLPRIFGMCPKILTSSIKTDLSPVFDFLVHDLKVPDHSFRKVVNKCPRLLTSSVVDQLKPALFYLRRLGLRDLEALAYQDCVLLVSNVERTLIPKLKHLESMGFSKEEVRCMVLRCPTLLTFSIENNFQPKFEYFSAEMGGKMEELREFPQYFSFSLENRIKVRYMEVVNSGVNLPLSLMLKSTDDEFRELIEKGVGGG 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04167 313 MobiDBLite consensus disorder prediction 18 51 - -
Vifa1g04167 313 MobiDBLite consensus disorder prediction 24 42 - -
Vifa1g04167 313 SMART mt_12 82 112 IPR003690 GO:0003690|GO:0006355
Vifa1g04167 313 SMART mt_12 188 219 IPR003690 GO:0003690|GO:0006355
Vifa1g04167 313 SMART mt_12 117 149 IPR003690 GO:0003690|GO:0006355
Vifa1g04167 313 SMART mt_12 154 185 IPR003690 GO:0003690|GO:0006355
Vifa1g04167 313 SMART mt_12 224 256 IPR003690 GO:0003690|GO:0006355
Vifa1g04167 313 SMART mt_12 257 288 IPR003690 GO:0003690|GO:0006355
Vifa1g04167 313 Gene3D Transcription termination factor 3, mitochondrial 49 308 IPR038538 -
Vifa1g04167 313 Pfam mTERF 74 186 IPR003690 GO:0003690|GO:0006355
Vifa1g04167 313 Pfam mTERF 197 302 IPR003690 GO:0003690|GO:0006355
Vifa1g04167 313 FunFam Transcription termination factor MTEF1, chloroplastic 143 310 - -
Vifa1g04167 313 PANTHER CGI-12 PROTEIN-RELATED 39 305 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04167 Vifa-Chr1 644176557 644177498 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa1g04167 mTERF 5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04167 K15032 - gmx:100788221 454.521