LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g04165	ATGACGTCACGTGCGTCGCATGGCGTCAGCGGCGGTGGCGGACGGCCGAGAGCTGGACGGTATGAGCTAGGTAGGACGCTAGGAGAAGGTAATTTTGCCAAGGTGAAGTTTGCGAGGAACGTTGAAACTGGAGAACATGTAGCTATCAAAATTCTTGATAAGGAGAAAATTCTCAAGCATAAAATGATTCGTCAGATAAAACAAGAAATATCAACAATGAAACTGATTAGACACCCAAATGTTATTCGCATGCATGAGGTGATAGCCAACAAATCAAAGATATTCATTGTAATGGAAATTGTGACTGGTGGGGAGCTGTTCGACAAAATTGCACGGAGTGGAAGGTTGAAAGAAGATGAAGCAAGAAAATACTTTCAGCAGCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTGCCACAGAGACCTAAAGCCTGAGAATTTGTTACTGGATGCTAATGGAGTGCTTAAAGTATCGGATTTTGGATTGAGTGCATTGCCTCAACAAGTTCGGGAAGATGGGCTACTTCATACAACATGCGGTACACCAAATTATGTTGCTCCAGAGGTGATTGACAACAAAGGGTATGATGGTGCAAAGGCAGATCTCTGGTCATGTGGTGTTATTCTTTTTGTTTTAATGGCTGGCTATTTGCCCTTTGAAGAAGACAATCTTATGGCTTTATATAAAAAGATTTTTAAGGCTGACTTCGCCTGTCCTCCATGGTTCTCTTCAAGTGCAAAGAAACTAATCAAGAGAATCCTTGATCCCAATCCCCGCACCCGGATTACAATTGCTGATGTAATTGAAAATGAGTGGTTCAAGAAGGGATATGCGCCTCCTGTGTTTGAACAGGCTAATGTTAGTCTTGATGATGTAAATTTTATTTTCAATGGTTCTATGGATTCAGATAATAGTGTTGTTGAGAGGCATGAAGAGGGGCCAGTTGCACCTGTGACCATGAATGCATTTGAACTTATTTCGAAATCTCAGGGCCTCAACCTTAGTAGTCTTTTCGAGAAGCAAATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCAGCGAATGAGATAATTTCAAAAATTGAGGCAGCGGCAGGACCTCTGGGGTTTGATGTCAAGAAGAACAACTGCAAGTTAAGGATTCACGGGGAAAAGACTGGACGGAAAGGTCATCTATCTGTAGCCACAGAGATTTTGGAGGTGGCCCCTTCAATTTACATGGTTGAGATGCGAAAGTTTGAAGGAGATACTCTGGAATTTCACAAGTTCTACAAAAATATATCAACTGGACTGAAGGATATCGTTTGGAAAGCCGATCCTATTGCTGAAGAAATAGACACCGGTGGCAGTAGTAAATCAAAATAA	1383	0.4158	MTSRASHGVSGGGGRPRAGRYELGRTLGEGNFAKVKFARNVETGEHVAIKILDKEKILKHKMIRQIKQEISTMKLIRHPNVIRMHEVIANKSKIFIVMEIVTGGELFDKIARSGRLKEDEARKYFQQLICAVDYCHSRGVCHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIDNKGYDGAKADLWSCGVILFVLMAGYLPFEEDNLMALYKKIFKADFACPPWFSSSAKKLIKRILDPNPRTRITIADVIENEWFKKGYAPPVFEQANVSLDDVNFIFNGSMDSDNSVVERHEEGPVAPVTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSKCSANEIISKIEAAAGPLGFDVKKNNCKLRIHGEKTGRKGHLSVATEILEVAPSIYMVEMRKFEGDTLEFHKFYKNISTGLKDIVWKADPIAEEIDTGGSSKSK	460

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g04165	460	MobiDBLite	consensus disorder prediction	1	20	-	-
	Vifa1g04165	460	FunFam	Non-specific serine/threonine protein kinase	13	100	-	-
	Vifa1g04165	460	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	19	432	-	-
	Vifa1g04165	460	Pfam	Protein kinase domain	21	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g04165	460	Gene3D	Phosphorylase Kinase; domain 1	13	100	-	-
	Vifa1g04165	460	ProSitePatterns	Protein kinases ATP-binding region signature.	27	50	IPR017441	GO:0005524
	Vifa1g04165	460	FunFam	Non-specific serine/threonine protein kinase	15	316	-	-
	Vifa1g04165	460	Pfam	NAF domain	320	380	IPR004041	GO:0007165
	Vifa1g04165	460	Gene3D	Transferase(Phosphotransferase) domain 1	101	282	-	-
	Vifa1g04165	460	ProSiteProfiles	NAF domain profile.	318	342	IPR018451	GO:0007165
	Vifa1g04165	460	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	140	152	IPR008271	GO:0004672\|GO:0006468
	Vifa1g04165	460	SUPERFAMILY	Protein kinase-like (PK-like)	18	292	IPR011009	-
	Vifa1g04165	460	CDD	CIPK_C	324	439	-	-
	Vifa1g04165	460	ProSiteProfiles	Protein kinase domain profile.	21	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g04165	460	CDD	STKc_SnRK3	21	275	-	-
	Vifa1g04165	460	FunFam	Non-specific serine/threonine protein kinase	317	443	-	-
	Vifa1g04165	460	Gene3D	Kinase associated domain 1, KA1	318	443	-	-
	Vifa1g04165	460	SMART	serkin_6	21	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g04165	Vifa-Chr1	644157174	644163485	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g04165	13	450	CBL-interacting serine-threonine protein kinases	AT1G01140	67.342	0.0	633

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Vifa1g04165		Pkinase	8.3e-75	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g04165	-		-	gmx:100788746	785.793