Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04164 ATGTTTACAACTAACAACTCTTCCTCCAACATGTCATTGCCAAATTTAGAGATCTCTCATGAGATATCCGTTTTAGACCAAGATGTGCGGTTAGCTGCGAGTACACCTAAGAAGCGTGCTGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCGGTGTATAGAGGCGTGAGGAAGAGAAACTTAGATAAATGGGTGTGTGAAATGAGAGAGCCTAACAAGAAAACTAAGATTTGGCTTGGAACATTTCCAACCGCTGAGATGGCAGCCCGAGCACACGATGTTGCAGCAATGGCATTGAGGGGCCGCTACGCCTGTCTCAATTTTGCAGACTCAACGTGGCGGCTCCCTAAGCCGGCCAGTACTGAAGCAAAAGATATTCAAAAGGCGGCTGCAGAAGCCGCCGAGGCTTTCAGACCAGATCAGACTTTATCGGCCAATGACGTTGACGAGACTTTAACGGTTAATGAAATTGACACGACGGTAGCTTCTGCCACCACAGAAGAGCAGAATACGTTTTCCATGGAAGTGGAAGAAGAGGGAGTGATGGACATGCCAGATATGTGGAGGAATACGGCGCTAATGTCCCCTACACATAGCTTTGACTATGCGTATGAAGATATTAATGTACAAGACTATCAAGATGAGGAGGATTTTAAAATATGGTTTGTAACCATAATTTGGTTGGTGGTGACATTAAATTTGTTAATTTCTCTGCATCCAAAACATGTGCGTTGTGATCGTTGTCATAACTGCAGACCCTGTTTCCTTATACTTCATCATGAATGGGTCATTCTGAAGGGAACGAAGAATAATTTTTTGGTCTCTTCCTCCTCTTCGAAGTATGGTACGATTTTGTGA 858 0.4452 MFTTNNSSSNMSLPNLEISHEISVLDQDVRLAASTPKKRAGRKKFKETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSTWRLPKPASTEAKDIQKAAAEAAEAFRPDQTLSANDVDETLTVNEIDTTVASATTEEQNTFSMEVEEEGVMDMPDMWRNTALMSPTHSFDYAYEDINVQDYQDEEDFKIWFVTIIWLVVTLNLLISLHPKHVRCDRCHNCRPCFLILHHEWVILKGTKNNFLVSSSSSKYGTIL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04164 285 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Vifa1g04164 285 SUPERFAMILY DNA-binding domain 52 111 IPR016177 GO:0003677
Vifa1g04164 285 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 19 221 IPR045277 GO:0003700
Vifa1g04164 285 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Vifa1g04164 285 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Vifa1g04164 285 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Vifa1g04164 285 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
Vifa1g04164 285 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Vifa1g04164 285 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Vifa1g04164 285 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04164 Vifa-Chr1 643990451 643992943 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04164 26 221 AP2-EREBP Transcription Factor Family AT4G25470 53.500 4.41e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa1g04164 AP2 3.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04164 - K09286 mtr:25497241 278.87