Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04163 ATGTTTCCAACTAACAACTCTTCCACTTCACAACCCATGTCCTCAAAACCTTCCACTTCCGCCAACACATCATTGCAAAATATAGAAGTCTTTCAAGGGAAGTCGGGTTTCAAAGAGGAGATGCGGTTAGCTGCTACTACTCCAAAGAAGCGTGCGGGAAGGAAGATATTCAAGGAGACTCGCCACCCGGTGTATAGGGGTGTGAGGAAGAGGAATTTAGATAAGTGGGTTTGTGAAATGAGGGAGCCTAACAAGAAGACTAAAATTTGGCTAGGAACTTTTCCAACTGCAGAGATGGCTGCCCGAGCTCACGATGTTGCTGCAATGGCGTTGAGGGGCCGCCATGCTTGTCTCAATTTTACAGACTCGTTGTGGAGGCTCCCTATTCCTGCAACCTCTAGTACAAAGGATATACAAAAGGCGGCTGCAGAAGCTGCCGAGGCTTTTAGACCGGACAAGAATTTAAAGACTAGTGAGATTGAAACAGTTGTAGCTGTTGTCCCCGGTGAGGACTTGATTAATATGTTTTGTGTTGAAGAGGATGAGGAGGAAGTGTTGAACATGCCAGATTTATGGAGGAATATGGTGTTAATGTCTCCTACACATAGCTTGGGATATGATGAGTATGAATATTTTGACCTAGACTTTCAAGATGATGAGATATCACTGTGGAACTTTGAAATTTGA 687 0.4425 MFPTNNSSTSQPMSSKPSTSANTSLQNIEVFQGKSGFKEEMRLAATTPKKRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAAMALRGRHACLNFTDSLWRLPIPATSSTKDIQKAAAEAAEAFRPDKNLKTSEIETVVAVVPGEDLINMFCVEEDEEEVLNMPDLWRNMVLMSPTHSLGYDEYEYFDLDFQDDEISLWNFEI 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04163 228 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Vifa1g04163 228 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Vifa1g04163 228 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Vifa1g04163 228 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Vifa1g04163 228 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Vifa1g04163 228 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Vifa1g04163 228 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Vifa1g04163 228 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Vifa1g04163 228 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 225 IPR045277 GO:0003700
Vifa1g04163 228 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g04163 228 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04163 Vifa-Chr1 643095196 643095882 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04163 35 226 AP2-EREBP Transcription Factor Family AT4G25470 53.695 8.18e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g04163 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04163 - K09286 psat:127130221 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04163 1 643095196 643095882 Vifa3g02995 3 848894312 848894923 ECH
Vifa1g04163 1 643095196 643095882 Vifa1g04163 1 643095196 643095882 ECH
Vifa1g04163 1 643095196 643095882 Vifa3g02995 3 848894312 848894923 PCT