Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04158 ATGTTCAACACCTCTTCAAATTCACAAACCATTTCCTCAAAAGCCTCCAAAGGGGAGCTGCGATTAGCTGCGAGTTGTCCGAAGAAGCCTGCAGGGAGGAAGATATTCAAGGAAACCCGCCACCCGGTGTATAGAGGTGTGAGGAAGAGGAATTTAGACAAGTGGGTTTGTGAAATGAGGGAGCCTAACAAGAAGACTAGAATTTGGCTAGGGACTTTTCCGACGGCCGAGATGGCAGCCCGAGCCCACGATGTTGCCGCAATGGCATTGAGAGGCCGATACGCCTGTCTCAATTTCGCAGACTCGGTGTGGCGACTCCCTGTTCCTGCAACCTCTGATACAAAAGATATACAAAAAGCGGCTACAGAAGCGGCCGAGGCTTTCAGACCAGGCAAGATTTTAACGACTAAGGACATTGATACAGTTGTAGCTATCGTCGCCACAGAGGAGGTGAGTATGTTTTGTGTGGAAGTGGAAGAAGAGGAGGAAGCATTGGATATGACAGAGTTGTGGAGGAATATGGTGATGATGTCCCCTACACACAGTTTTGAGTATCATGAGTATGAACATATTGATGTACAAGAATATCAAGATGAAGAGGTATCACTATGGACTTTTTAA 621 0.4686 MFNTSSNSQTISSKASKGELRLAASCPKKPAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPVPATSDTKDIQKAATEAAEAFRPGKILTTKDIDTVVAIVATEEVSMFCVEVEEEEEALDMTELWRNMVMMSPTHSFEYHEYEHIDVQEYQDEEVSLWTF 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04158 206 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Vifa1g04158 206 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Vifa1g04158 206 SUPERFAMILY DNA-binding domain 43 102 IPR016177 GO:0003677
Vifa1g04158 206 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 205 IPR045277 GO:0003700
Vifa1g04158 206 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Vifa1g04158 206 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Vifa1g04158 206 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Vifa1g04158 206 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Vifa1g04158 206 FunFam Ethylene-responsive transcription factor 2 42 101 - -
Vifa1g04158 206 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04158 Vifa-Chr1 641386558 641387178 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04158 21 206 AP2-EREBP Transcription Factor Family AT4G25470 55.670 6.40e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g04158 AP2 6.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04158 - K09286 mtr:25497241 277.715