Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04156 ATGGGGAAGAAAAAGAAGCAAATAGGAGAAACAAGTGAAGAGAATGGGAATCATGATAAAAGTCCAAATGTGTATGATAATGATACTATAGTGTTTATATCTATGGCTCAAGAGTTGAAGGAAGAAGGTAACAAGATGTTTCAGAAGAGAGATCTTCAGGGAGCTATGGTAAAGTATGAGAAAGCGCTCAGGTTGCTTCCGAGTAATCATATAGATGTGTCGTATGTGCGTAGCAATATGGCTGCGTGTTATATGCAGATGGGGCTTGGTGAGTACCCTAGGGCGATTAATGAATGCAATTTGGCTCTTGAGGTTACTCCGAAATATAGTAAAGCTTTGTTGAAGAGAGCGAGGTGTTATGAGGCTTTGAATAGACTTGATTTGGCGTTGAGAGATGTTAGCGCTGTTTTGGTGATGGAGCCGAATAATATCATGGCGGTGGAGATCTCGGATAAGGTGAAAAGTGCGCTTGAAGATAGAGGATTGAGAGTAAATGATGCGCAAATTGAGTTGCCTCCAGATTATGTTGAACCTTCTTTTGTTGTCTCTTCTAAAAAGGTAGTGAAAGAAAAGAAACACAAGAAAAAGAGCAAAAAAGAGAAGGTGACAGCTTCCAATGAAATCGTAGAAAATCAAGCTGAGGAGAAATTTAAAGAGAAGGAAGATGTGGTCAATGTTGCAGCACATAAGGCTGAGGAAAATCATCAAGAAGAGAAAAAAGAGGGTGATAAATCTAAAAAGAAGGCGGTCAAGGAAAAGATTGATAAGCAGAAAGATAATGTTAAGGAGGTCAATGAAGAAAAAAGTAATGGTATAAATGAAGCTGTACCTAAGAAAACTGTGAAACTTGTTTTTGGCGATGATATAAGGTGGGCTCAATTGCCAGTTAATTGCAGCCTCTTTCAGCTAAGAGAAGTTATTTGTGACCGGTTCCCAGGCCTAGGGGCAGTTCTTGTCAAATATAGGGATCTAGAAGGTGATTTGATCACAATCACTAGTGATGAAGAATTGAAGTTGGCTGAAACAGGATCACAGAGTTCCATCCGACTGTATATAGTAGAAGCTAATCCTAATCACGATCCATTCTACGACAAACTTCAGGTGAAGGATGTTGAAATTGATAATGCTCCTAAGAATGACTGGGTGGTGAAATTAAACGAAATTATTAGCCCATCTTGTGTTGAAGATTGGATCATTCAATTTGCACAACTGTTCAAGAATCATGTTGGATTTGAATCCGACAGATACTTAGATTTTCATGACCTTGGGATGAAGCTCTATTCGGAGGCTGTGGAGGATACGGTTACAAGCGAGGAAGCGCAAGGCCTATTTGACATGGCAGGAGGTAAATTCCAAGAGATGACGGCTCTAGCATTGTTCAATTGGGGAAATGTGCATATGTCCAGGGCAAGGAAGAAAGTATATTTAACTGAAGATTCTTCTAAAGAGCACATGCGTGAACAAATCAAAAGTTCATATGAATGGGCGCAAAAAGAATATTCCAAAGCTGGAGAAAAATTTGAAGCAGCCATTAAAATAAAGTCAGATTTTTATGAAGGCTTACTTGCTCTAGGTCAGCAACGGTTCGAGCAAGCAAAACTTTCTTGGTATTATGCACTCAGTAGTAATGTAGATTTAGCAACATGGCCCTCCACAGAGGTTCTTCACCTATACAACAGTGCTGAGGAGAATATGGAGAAAGGAATGCTGATGTGGGAAGAATCACAAGAGCAGGAAACGAGCGAAACCTCCAATATTGAATTGAACAGGCTATTTAAAAATATGTCATCAGATGAAACTGCTGCACTGGCGGCAAACATGAGGTCTCAGATAAATCTCTTGTGGGGGACCATGCTATATGAACGGTCGATTGTAGAATTCAAATTAGGGCTACCTATATGGCATGAATCTTTGGAAGTTGCAATCGAGAAGTTTGAACATGCAGGAGCTTCTCCAACAGATACAGCTGTAATGCTGAAAAACCACTGTTCAAATAACACTGCCGTAGATGGTCTAGGTTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTATGAAGCTAAAAAGTTGCAGAAAGGAGTTCCGTCCTTTCGTTTGGAAGCAATGTTCAGAAGACGAGCGTCAAAAATTTATCATGCCTTTGAGCTTGTATGA 2160 0.3977 MGKKKKQIGETSEENGNHDKSPNVYDNDTIVFISMAQELKEEGNKMFQKRDLQGAMVKYEKALRLLPSNHIDVSYVRSNMAACYMQMGLGEYPRAINECNLALEVTPKYSKALLKRARCYEALNRLDLALRDVSAVLVMEPNNIMAVEISDKVKSALEDRGLRVNDAQIELPPDYVEPSFVVSSKKVVKEKKHKKKSKKEKVTASNEIVENQAEEKFKEKEDVVNVAAHKAEENHQEEKKEGDKSKKKAVKEKIDKQKDNVKEVNEEKSNGINEAVPKKTVKLVFGDDIRWAQLPVNCSLFQLREVICDRFPGLGAVLVKYRDLEGDLITITSDEELKLAETGSQSSIRLYIVEANPNHDPFYDKLQVKDVEIDNAPKNDWVVKLNEIISPSCVEDWIIQFAQLFKNHVGFESDRYLDFHDLGMKLYSEAVEDTVTSEEAQGLFDMAGGKFQEMTALALFNWGNVHMSRARKKVYLTEDSSKEHMREQIKSSYEWAQKEYSKAGEKFEAAIKIKSDFYEGLLALGQQRFEQAKLSWYYALSSNVDLATWPSTEVLHLYNSAEENMEKGMLMWEESQEQETSETSNIELNRLFKNMSSDETAALAANMRSQINLLWGTMLYERSIVEFKLGLPIWHESLEVAIEKFEHAGASPTDTAVMLKNHCSNNTAVDGLGFKIDEIVQAWNEMYEAKKLQKGVPSFRLEAMFRRRASKIYHAFELV 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04156 719 Coils Coil 228 274 - -
Vifa1g04156 719 SMART tpr_5 110 143 IPR019734 GO:0005515
Vifa1g04156 719 SMART tpr_5 36 69 IPR019734 GO:0005515
Vifa1g04156 719 SMART tpr_5 74 109 IPR019734 GO:0005515
Vifa1g04156 719 ProSiteProfiles PB1 domain profile. 278 355 IPR000270 GO:0005515
Vifa1g04156 719 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Vifa1g04156 719 CDD PB1 280 352 - -
Vifa1g04156 719 SMART PB1_new 278 355 IPR000270 GO:0005515
Vifa1g04156 719 PANTHER PROTEIN CLMP1 3 717 IPR044517 -
Vifa1g04156 719 MobiDBLite consensus disorder prediction 230 269 - -
Vifa1g04156 719 Pfam PB1 domain 280 354 IPR000270 GO:0005515
Vifa1g04156 719 Gene3D - 278 355 - -
Vifa1g04156 719 Gene3D Tetratricopeptide repeat domain 33 160 IPR011990 GO:0005515
Vifa1g04156 719 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g04156 719 SUPERFAMILY TPR-like 36 539 IPR011990 GO:0005515
Vifa1g04156 719 SUPERFAMILY CAD & PB1 domains 278 365 - -
Vifa1g04156 719 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04156 Vifa-Chr1 641189496 641191793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04156 19 143 Calmodulin-binding Proteins AT3G25230 32.117 6.67e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04156 K26538 - gmx:100820306 1046.57