Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04155 ATGAATAAGAAGAAGAAATATCGACACACTCCTGAACAGACTCAGGAGCTTGAAAATTTCTTCAAGCAGTGTCGTCATCCTGATGAGAAGCAAAGATCTGATCTTAGCAAAAAGCTTGGTTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAGAATCGACGAACTCAAGTAAAGACACAATTGGAGCACAATGAGAACATGATTCTAAGGCAGGAAAATGAGAAACTCCAGGCAGAGAACAATCTGATGAAGCAAGTAATGTCAAATACAATATGTAGCAATTGCGGTGGCCCAGCAATTCCTAGACAAATTTCAATGGAGGGACACCAGATTATAATTAAGAATGCTCTACTCGAAAACGAATTGAACCGAGTGTATACCTTGTACAACAAGTTACTCGGCCACCCAATCTCGGCATTGGCCTCTACGTCCATGCAGACTCAAAATTCTGATTTTTTACTTTAA 465 0.3978 MNKKKKYRHTPEQTQELENFFKQCRHPDEKQRSDLSKKLGLENKQVKFWFQNRRTQVKTQLEHNENMILRQENEKLQAENNLMKQVMSNTICSNCGGPAIPRQISMEGHQIIIKNALLENELNRVYTLYNKLLGHPISALASTSMQTQNSDFLL 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04155 154 PRINTS Lambda-repressor HTH signature 40 56 IPR000047 GO:0003677
Vifa1g04155 154 PRINTS Lambda-repressor HTH signature 31 40 IPR000047 GO:0003677
Vifa1g04155 154 SMART HOX_1 2 64 IPR001356 GO:0003677
Vifa1g04155 154 CDD homeodomain 3 60 IPR001356 GO:0003677
Vifa1g04155 154 ProSitePatterns 'Homeobox' domain signature. 35 58 IPR017970 GO:0000981|GO:0006355
Vifa1g04155 154 ProSiteProfiles 'Homeobox' domain profile. 1 60 IPR001356 GO:0003677
Vifa1g04155 154 Pfam Homeodomain 3 58 IPR001356 GO:0003677
Vifa1g04155 154 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 3 146 IPR042160 -
Vifa1g04155 154 FunFam Homeobox-leucine zipper protein HDG1 1 76 - -
Vifa1g04155 154 SUPERFAMILY Homeodomain-like 2 62 IPR009057 -
Vifa1g04155 154 Coils Coil 61 89 - -
Vifa1g04155 154 Gene3D - 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04155 Vifa-Chr1 640265765 640266293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04155 3 134 Homeobox Transcription Factor Family AT4G00730 61.364 7.07e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vifa1g04155 Homeodomain 1.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04155 K09338 - gmx:100785102 212.616