Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04153 ATGTTTACTAGTAACAGCTCTTCCAATTCAAACCCCATTTCCGATGAGGTTATTAGGTTAGCCACGAGTTACCCGAAGAAGCCTGCAGGGAGGAAGAAATTCAAGGAGACTCGCCACCCGGTGTATAGGGGTGTGAGAAAGAGGAACCTAGATAAATGGGTGTGCGAAATGAGAGAGCCGTACAAGAAGACTAGGATTTGGCTAGGGACTTTTCCAACCCCCGAGATGGCTGCCCGTGCTCACGATGTTGCTGCATTGGCGCTTAGGGGCCGCTACGCCTGTCTCAATTTCGCCGATTCTGTATGGAGGCTACCGATTCCTGCAACCACTGACACAAAAGATATACAAAAGGCGGCTTCTCAAGCAGCCGAGGCTTTCAGACCAGACCAGATTATAATGACTAAAAATGTTGACAAAGTTGTAGCCGTCGTGGCCACGGAAGAGCTGAGTATGTTTTGCGTGGAAGTAGAAGAAGAGGAAGAAGCATTGAATCTGCCAGATATGTGGAGGAATATGGCTCTAATGTCCCCTACACATAGTTTTGGGGATCATGAGTATGAACATATTAATGTACAAGACTTTCAAGATCAAGATGAAGAGGTATCACTATGGAACTACTAA 621 0.4638 MFTSNSSSNSNPISDEVIRLATSYPKKPAGRKKFKETRHPVYRGVRKRNLDKWVCEMREPYKKTRIWLGTFPTPEMAARAHDVAALALRGRYACLNFADSVWRLPIPATTDTKDIQKAASQAAEAFRPDQIIMTKNVDKVVAVVATEELSMFCVEVEEEEEALNLPDMWRNMALMSPTHSFGDHEYEHINVQDFQDQDEEVSLWNY 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04153 206 CDD AP2 42 100 IPR001471 GO:0003700|GO:0006355
Vifa1g04153 206 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Vifa1g04153 206 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Vifa1g04153 206 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Vifa1g04153 206 Pfam AP2 domain 40 90 IPR001471 GO:0003700|GO:0006355
Vifa1g04153 206 SUPERFAMILY DNA-binding domain 41 100 IPR016177 GO:0003677
Vifa1g04153 206 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Vifa1g04153 206 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Vifa1g04153 206 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Vifa1g04153 206 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 206 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04153 Vifa-Chr1 640084189 640084809 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04153 1 206 AP2-EREBP Transcription Factor Family AT4G25470 51.402 5.18e-64 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g04153 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04153 - K09286 mtr:25497241 285.034