Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04146 ATGGATTTCGACGGTGGTAATAAGCGTGTTTATAACCGACTCGGTGGTCCCACCGGCGGCGACACAAAGAATCAGAAAGTGTGTTATAAATGGCAAGCGGGGAACTGTAACCGTTTTCCGTGTCCGTTTCTGCATAGTGAGCTGCCTACTTCTAATGGGAATGGGGCTCCTTCAAAGCGGCCTTATGCTGAGAATTCTGGTTTCTCGGGTAATCGGCGTGGTGGGGGGTCGAGTTTTAATACGTGGGGGCCGGGGCGTGGCGGGGGACGTGGCCGCGGTGGTGGAAGGGGTAGTGTGGGAGGAGGTGGTAGAGGAGTTGTTGTGAATGTTGAGAGAGTTTGTACTTTTTGGATTCAAGGGACTTGTGGTTATGGAGATAGGTGTAAGTTTCTTCACTCTTGGAGTGTAGGGGATGGGTTTTCTTTATTGACTCAGCTTGAAGGACATAAAAAGGTTGTGAGTGGAATTGCTATGCCCTCTGGTTCGGATAAGCTTTATACTGGAAGTACTGATGAGACCGTAAGGGTTTGGGACTGCCAGTCTGGACAGTGTATAGCTGTGATCAATCTTGGTGGTGAAGTTGGTTGTATGATCAGTGAAGGTCCCTGGCTTTTTGTTGGCATACCCAATTTTGTTAAGGCTTGGAACACACAAAACTCAATGGAACTAAGTCTAGATGGCCCTGTTGGTCAAGTTTATGCACTTGTTGTGATTAATGATATGCTCTTTGCTGGTACGCAGGATGGAGCTATATTGGTATGGAAGTTTAATGTAGCTGCCAACTGTTTCGAGCCAGCTGCATCTCTTAAAGGTCATTCCCGTGGTGTTGTTTCATTAGTCGTTGGAGCTAATAGACTTTATTCTGGTTCAATGGACAATACAATTAGAGTCTGGAATCTTGAAACCTTGCAGTGTTTACAGACACTAACAGGGCACACATCTGTTGTGATGTCTGTCCTATGCTGGGATCAGTTCCTTATATCTTGTTCATTAGACAAAACAGTGAAGGTATGGTTTGCCACAGAAAGTGGAAATTTGGAAGTGACGTATACTCACACCGAAGAACATGGTATAGTCACCCTCTGTGGGATGCATGATTCACAAGGAAAGCCCATATTGCTGTGCTCTTGCAATGATAACACTGTTCGCCTCTATGACCTGCCATCATTTGCAGAGAGAGGCAAGATATTCAACAAACAAGAAGTGCGGGCAATTCAGACTGGTCCTGGTAGCATATTCTTCACCGGTGATGGAACTGGCCAAGTGAGAGTGTGGAATTGGATAGCGGAACCAGCCACAGCCACGGCCACGGCCAATAACATCCAATAA 1329 0.4643 MDFDGGNKRVYNRLGGPTGGDTKNQKVCYKWQAGNCNRFPCPFLHSELPTSNGNGAPSKRPYAENSGFSGNRRGGGSSFNTWGPGRGGGRGRGGGRGSVGGGGRGVVVNVERVCTFWIQGTCGYGDRCKFLHSWSVGDGFSLLTQLEGHKKVVSGIAMPSGSDKLYTGSTDETVRVWDCQSGQCIAVINLGGEVGCMISEGPWLFVGIPNFVKAWNTQNSMELSLDGPVGQVYALVVINDMLFAGTQDGAILVWKFNVAANCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLTGHTSVVMSVLCWDQFLISCSLDKTVKVWFATESGNLEVTYTHTEEHGIVTLCGMHDSQGKPILLCSCNDNTVRLYDLPSFAERGKIFNKQEVRAIQTGPGSIFFTGDGTGQVRVWNWIAEPATATATANNIQ 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04146 442 SMART WD40_4 262 299 IPR001680 GO:0005515
Vifa1g04146 442 SMART WD40_4 218 255 IPR001680 GO:0005515
Vifa1g04146 442 SMART WD40_4 389 426 IPR001680 GO:0005515
Vifa1g04146 442 SMART WD40_4 302 339 IPR001680 GO:0005515
Vifa1g04146 442 SMART WD40_4 343 386 IPR001680 GO:0005515
Vifa1g04146 442 SMART WD40_4 139 178 IPR001680 GO:0005515
Vifa1g04146 442 FunFam Zinc finger CCCH domain-containing protein 48 226 434 - -
Vifa1g04146 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 187 IPR001680 GO:0005515
Vifa1g04146 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 178 - -
Vifa1g04146 442 Pfam Zinc finger domain 114 132 - -
Vifa1g04146 442 Pfam WD domain, G-beta repeat 265 299 IPR001680 GO:0005515
Vifa1g04146 442 Pfam WD domain, G-beta repeat 304 338 IPR001680 GO:0005515
Vifa1g04146 442 Pfam WD domain, G-beta repeat 142 178 IPR001680 GO:0005515
Vifa1g04146 442 FunFam Zinc finger CCCH domain-containing protein 48 134 224 - -
Vifa1g04146 442 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Vifa1g04146 442 PRINTS G protein beta WD-40 repeat signature 286 300 IPR020472 -
Vifa1g04146 442 PRINTS G protein beta WD-40 repeat signature 165 179 IPR020472 -
Vifa1g04146 442 ProSiteProfiles Zinc finger C3H1-type profile. 113 135 IPR000571 GO:0046872
Vifa1g04146 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 308 IPR001680 GO:0005515
Vifa1g04146 442 PANTHER - 112 433 IPR044715 -
Vifa1g04146 442 SUPERFAMILY CCCH zinc finger 111 133 IPR036855 GO:0046872
Vifa1g04146 442 SUPERFAMILY WD40 repeat-like 131 428 IPR036322 GO:0005515
Vifa1g04146 442 ProSitePatterns Trp-Asp (WD) repeats signature. 286 300 IPR019775 -
Vifa1g04146 442 Gene3D - 285 439 IPR015943 GO:0005515
Vifa1g04146 442 ProSiteProfiles Zinc finger C3H1-type profile. 22 48 IPR000571 GO:0046872
Vifa1g04146 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 302 - -
Vifa1g04146 442 MobiDBLite consensus disorder prediction 52 101 - -
Vifa1g04146 442 SMART c3hfinal6 23 47 IPR000571 GO:0046872
Vifa1g04146 442 SMART c3hfinal6 109 134 IPR000571 GO:0046872
Vifa1g04146 442 Gene3D - 122 284 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04146 Vifa-Chr1 638977630 638982119 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04146 241 426 Miscellaneous Gene Families AT5G08390 27.778 4.51e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa1g04146 WD40 0.00055 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04146 - - mtr:25497231 801.201