Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04145 ATGTTAACTCTGAAAGGAGGAAGCAGACCACCATGGGTAGGTTTAGGAGCATCAGTTTGGGTTCAAATAGCATCAGGAAACACCTTTACTTTTCCTCTATACTCACACTCTTTGAAATCTGTTTTGGGTTTCAATCAAAGGCAAGTTACACTTCTTGGTGTTGCTAATGATATTGGTGAAAACGTTGGTTTGCTTCCTGGTATCGCTTGCAATACGTTTCCGCCTTGGCTTATACTCTCTGTTGGTGCTTTTGCTTCTTTTCTTGGCTATGGTACTCTCTGGCTTGCTGTTAGCCAAACAGTTACCAATCTTCCTTATTTGCTGCTTTGGTTTGCCCTTGTTATTGCTTCCAACAGTAGTGCATGGCTAACCACCTCAGTTCTAGTAACCAACATGAGAAATTTCCCAGTTAGTCGAGGCAAAGTTGCGGGAATCCTGAAAGGTTATGGAGGACTTAGTGCTGCAGTTTTCACTCAAATTTACAGCCTACTGCTTCATAACAATTCTTCTACGTTCCTCATGTTGCTGACGATCGGTATTCCAGTTGTTTGTTTCAGTATGATGTTTCTTGTTAGGCCTTGTACACCGGCTTTAGATGAAGACTCCACATCTAGTTCTCATTTTATCTTTATCCAATGTGCAAGTGTTGTCTTGGGTGTATATCTTCTTGCAACCACGATATTTGACTCTCTCGGGCAAGGAAAAGATGACAAAATAGAGCCGCTGCTGGGATCTTCGTCAACAGGAGCGCTTGGAAGCTCGAACGATGATGATTCATCTGAGGTAGCTATGCTTCTTGCGTTAGTTACTGTTCTCAATAATCTAGCCCAAATAGGTATTGCACAAGGTGAGGGAGATACTACAACTTTACTGTCAATTTTCAGTTTTTGTAATTTCGTTGGTCGGCTTGGTGGAGGAGTTGTTTCAGAGCATTTTGTCCGGACCAAATTGCTCCCAAGGACATTCTGGTTGACATGCACCCAGACAGTCATGCTATTGGTATATCTTCTATTTGCCTATGCTGTAAATGGAAGCCTTTATCCTGCAGTGGCATTTCTTGGTGTCTGCTACGGTGTGCAGGTTTCCATAATGATCCCTACCGTTTCTGAGCTTTTCGGTTTGAAAAACTTTGGCGTATTAGGCAACGTCATGTCGTTGGGTAATCCACTTGGGGCAACCATTTTCTCAGCTCTGCTAGCGGGTTCTATATATGACAAAGAGGCAGCAAAGCAGCACGGTCTTAGCCTGCACGGTCTTGACCTTTTGGCTTCTGAAGTTTCCTGCATCGGCCCAGATTGCTTTAAGCTGACATTTTTCATTCTTTCTAGTGTTTGTGCCGCTGGCATCATCTTGAGCATCATTCTGACTCTCAGAATTCGACCCGTTTACCAAATGCTTTATGCTGGTGGATCTTTCAGAATTCCTCAAACATCTTCGAGTACCTAA 1446 0.4322 MLTLKGGSRPPWVGLGASVWVQIASGNTFTFPLYSHSLKSVLGFNQRQVTLLGVANDIGENVGLLPGIACNTFPPWLILSVGAFASFLGYGTLWLAVSQTVTNLPYLLLWFALVIASNSSAWLTTSVLVTNMRNFPVSRGKVAGILKGYGGLSAAVFTQIYSLLLHNNSSTFLMLLTIGIPVVCFSMMFLVRPCTPALDEDSTSSSHFIFIQCASVVLGVYLLATTIFDSLGQGKDDKIEPLLGSSSTGALGSSNDDDSSEVAMLLALVTVLNNLAQIGIAQGEGDTTTLLSIFSFCNFVGRLGGGVVSEHFVRTKLLPRTFWLTCTQTVMLLVYLLFAYAVNGSLYPAVAFLGVCYGVQVSIMIPTVSELFGLKNFGVLGNVMSLGNPLGATIFSALLAGSIYDKEAAKQHGLSLHGLDLLASEVSCIGPDCFKLTFFILSSVCAAGIILSIILTLRIRPVYQMLYAGGSFRIPQTSSST 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04145 481 Gene3D MFS general substrate transporter like domains 261 464 IPR036259 -
Vifa1g04145 481 CDD MFS_Mch1p_like 10 449 - -
Vifa1g04145 481 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 12 228 - -
Vifa1g04145 481 Pfam Nodulin-like 11 230 IPR010658 -
Vifa1g04145 481 SUPERFAMILY MFS general substrate transporter 20 196 IPR036259 -
Vifa1g04145 481 SUPERFAMILY MFS general substrate transporter 269 461 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04145 Vifa-Chr1 638857541 638859970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04145 2 478 Nodulin-like Gene Family AT1G80530 46.221 1.09e-167 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04145 - - gmx:100794012 716.457