Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04144 ATGGGTAAAGGGGGAATGTCAATTGATGATCATGTTGAACAACAGAATATGGCTGCTTGGCTTGTTGGATTAAACACTCTCAAGATTCAACCTTTCAATCTTCCAACTCTTGGACCTCATGATGTCAGAATTAGAATGAAAGCTGTTGGAATCTGTGGGAGTGATGTTCACTACCTCAAGACAATGAGATGTGCAGATTTTATTGTTAAAGAACCAATGGTTATTGGTCATGAGTGTGCTGGGATCATAGAAGAAGTTGGTAGTGAAGTCAAGACGTTGGTGTCTGGTGACCGTGTCGCGATCGAGCCTGGGATCAGTTGTTGGCGTTGCAACCATTGCAAACTTGGTCGATATAATCTATGCCCTGATATGAAGTTTTTTGCTACTCCGCCAGTTCATGGTTCCCTTGCTAATCAGATAGTTCATCCAGCAGATCTATGTTTTAAACTACCAGACAATGTGAGCTTGGAGGAAGGGGCAATGTGTGAACCCTTAAGTGTTGGCGTTCATGCTTGTAGACGAGCTAATATTGGACCGGAAACAAATGTGTTGATTATGGGAGCAGGACCTATTGGACTTGTTACAATGCTTTCGGCTCGCGCTTTTGGGGCACCTAGGATTGTTGTCGTGGATGTGGATGACCATCGTTTATCTGTTGCAAAAAGTCTTGGCGCAGACGATATTGTTAAAGTTTCAACAAACATTCAGGATGTAGCGGACGAAGTTAAGCAAATACATAATGTTATGGGAGCTGGTGGCAAAGTTTGTCTTGTTGGAATGGGTCATTCTGAAATGACTGTGCCACTCACACCTGCTGCTGCAAGGGAAGTTGATGTTGTTGGCATTTTCCGCTATAAGAATACATGGCCTCTTTGCCTTGAGTTTCTAAGGAGTGGAAAAATTGATGTAAAACCACTTATAACTCATAGGTTTGGATTCTCGCAAAAGGAAGTGGAAGAAGCCTTTGAAACAAGTGCTCGGGGTGGTAATGCTATTAAGGTCATGTTCAACCTTTAG 1017 0.4277 MGKGGMSIDDHVEQQNMAAWLVGLNTLKIQPFNLPTLGPHDVRIRMKAVGICGSDVHYLKTMRCADFIVKEPMVIGHECAGIIEEVGSEVKTLVSGDRVAIEPGISCWRCNHCKLGRYNLCPDMKFFATPPVHGSLANQIVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLSARAFGAPRIVVVDVDDHRLSVAKSLGADDIVKVSTNIQDVADEVKQIHNVMGAGGKVCLVGMGHSEMTVPLTPAAAREVDVVGIFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFNL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04144 338 Pfam Zinc-binding dehydrogenase 190 295 IPR013149 -
Vifa1g04144 338 SMART PKS_ER_names_mod 23 336 IPR020843 GO:0016491
Vifa1g04144 338 Pfam Alcohol dehydrogenase GroES-like domain 39 150 IPR013154 -
Vifa1g04144 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 153 302 IPR036291 -
Vifa1g04144 338 Gene3D - 167 283 - -
Vifa1g04144 338 PANTHER SORBITOL DEHYDROGENASE 14 249 - -
Vifa1g04144 338 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 76 90 IPR002328 GO:0008270|GO:0016491
Vifa1g04144 338 CDD sorbitol_DH 18 337 IPR045306 GO:0016616
Vifa1g04144 338 Gene3D - 27 324 - -
Vifa1g04144 338 SUPERFAMILY GroES-like 16 188 IPR011032 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04144 29 250 Monolignol Biosynthesis Gene Families AT4G37980 28.326 5.71e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04144 K00008 - gmx:100820630 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04144 1 638825077 638829656 Vifa1g04144 1 638825077 638829656 ECH