Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04136 ATGAGACCTCCCGGCGGAAGCAGCAACGTTCATCGGCAACCGAAAGAGTCGGCCAACTTACCACCAACTCCACTAAACAGCCACCGTGACTCTGACGTGAGTTTAGCCAGTAGTCGTCCATCCTCCGTCGGAATCCATTCTCTCGACGTTTACAAAGACCGTTCGTACCAACAGAATGCAACCGCAACCATCAATTCATTCTTGGCCTCTCAGGATTTGAATGTCTCTTTCAAACCTTTTTCCTCTCCTTCCGCTAAACACATTCACCAAACCCTAATCTTCCTCGTCGGGCTCCTCGATTTCAATATAAACAAAATAGAAGATCTTCCGCCACTTCTCAAATTCATGAATTACCCTCACAAACTCAATAAATCTGTTCTCAAATCCCCCGCTGCACCTCATCAATGGCCTTCCATTCTCGCCCTCATTCATTGGCTTGTTCAGTCTTGTCAAATTCATCTCTCTTTTTCTTCTCCCTCCCACACCACCACCCTCCAAACCAACAACATCGTCTTCCAGTATTCTCTCAACGCTTATCTAAATTTCATTAGAGGTGACGATGAAGCCATCTCCGAACTCGACCACGAAATCTGCACCAGGATTCTCCGTGAGAAGTCTAACGCTGACAACACCCTTGCTATCGCTGAACAAAAGGTCTCTGAATTGGAGGCTCAATTGGAGGGATTGAGGTCTGCTCCTTCTCAGAAGGATTTACTCGACAAAGAGAAGGAAATGCTTCAAGGCGATGTCATTAAGTTTCACAAGATTATTGACGAGTTTGGGTTGCGGATTGAGTCGAAAGAGAGGGATTTGGTGGAGAAGGAGAAACAGTTGAAGGCTAAGGTCGTGGAGAGCGACAACATATGTCAAGAGAATAAAATGCTAAAGAAGAAGGTGGAGTCACAGCCTTTTAATACCAGGGACGTTGAGAGGATGAAAAGAGAGTTAGACTTAGAACCTATCACCAGGGATTGTAACCAAGCCCTTAAGAGGTTGAAGATTGGTAATGACATTCAATATGTGTTGAATCCCAAGGGAACCACGCCTGCTGAGATCATGGGCATATGCTGCTGCCGTACAATGAATCAAAACTATGCAAATATTCTTTTGATGCTTTTACGTCTCCGTCAGGCTTATGATCACCCACTTCTTGTTAAAGAATACAATTCTGATCCTGTTGGAAAAGATTCTGTTGAAATGGCAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTTTGGAAACAACTGCCGCTATATGTTTTGTCTGCAATAGGCCAGAGAATAAGCTTGGAGATGATGAAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTTTGGCAAGCCATGGCAGTTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGATATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTCTACAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGGCCTCTCAGTCCTCGTCAAGCAATTTTGTGCCCTGTTTCTGAGAAATCACAAGCTTATGCTCTGAAGGTTCGAGATCAGATTCACCAAGCAGGATATCATGTAGATGCTGATACAACTGATAGGAAGATTCAGAAGAAGAAAAAATTACAAGCTGCAATTAAGGATTCTGTGTCTGAAAATGAGGCATTTCAGAAAGTATTTGGAAAAGAAAAGCATGGATATGTTCGTAGTATGGGACTTGGAGTTACACCATCTCAAATTAATAGATCTACGAGATCAACATCTTCTTCTGCAGAAAGCGAACAAATAAACGAAATGCAAGAAGAAATTAATGCACTTAAAGAAAAGAATTCAAAAATTGATGAATTAACACAGGCAATCATATTCTTAACGCAAAGGGACAAGGCGAGGACAAAGGAAATTGAACTCTTAATGCAAATGCATAATTTTAGTGGAAGACAGGGATTGGAATCACCCGCTGATGGTAGACGTTCATCTGAGTCTAGCTACCGTATTGGAGATAATGGAACTTCAGGGGGGACAAATTAG 2085 0.4259 MRPPGGSSNVHRQPKESANLPPTPLNSHRDSDVSLASSRPSSVGIHSLDVYKDRSYQQNATATINSFLASQDLNVSFKPFSSPSAKHIHQTLIFLVGLLDFNINKIEDLPPLLKFMNYPHKLNKSVLKSPAAPHQWPSILALIHWLVQSCQIHLSFSSPSHTTTLQTNNIVFQYSLNAYLNFIRGDDEAISELDHEICTRILREKSNADNTLAIAEQKVSELEAQLEGLRSAPSQKDLLDKEKEMLQGDVIKFHKIIDEFGLRIESKERDLVEKEKQLKAKVVESDNICQENKMLKKKVESQPFNTRDVERMKRELDLEPITRDCNQALKRLKIGNDIQYVLNPKGTTPAEIMGICCCRTMNQNYANILLMLLRLRQAYDHPLLVKEYNSDPVGKDSVEMAKRLPKEMLINLFNSLETTAAICFVCNRPENKLGDDETWDRAESALKEALDEFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPLSPRQAILCPVSEKSQAYALKVRDQIHQAGYHVDADTTDRKIQKKKKLQAAIKDSVSENEAFQKVFGKEKHGYVRSMGLGVTPSQINRSTRSTSSSAESEQINEMQEEINALKEKNSKIDELTQAIIFLTQRDKARTKEIELLMQMHNFSGRQGLESPADGRRSSESSYRIGDNGTSGGTN 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04136 694 SUPERFAMILY Class II aaRS ABD-related 514 560 - -
Vifa1g04136 694 Coils Coil 205 232 - -
Vifa1g04136 694 Pfam HEC/Ndc80p family 31 159 IPR005550 GO:0031262|GO:0051315
Vifa1g04136 694 Coils Coil 608 645 - -
Vifa1g04136 694 Coils Coil 257 284 - -
Vifa1g04136 694 MobiDBLite consensus disorder prediction 673 694 - -
Vifa1g04136 694 MobiDBLite consensus disorder prediction 664 694 - -
Vifa1g04136 694 MobiDBLite consensus disorder prediction 593 616 - -
Vifa1g04136 694 Gene3D Bira Bifunctional Protein; Domain 2 395 529 IPR045864 -
Vifa1g04136 694 MobiDBLite consensus disorder prediction 10 40 - -
Vifa1g04136 694 Gene3D Ncd80 complex, Ncd80 subunit 50 154 IPR038273 -
Vifa1g04136 694 PANTHER KINETOCHORE PROTEIN NDC80 HOMOLOG 317 355 - -
Vifa1g04136 694 MobiDBLite consensus disorder prediction 1 40 - -
Vifa1g04136 694 SUPERFAMILY Class II aaRS and biotin synthetases 407 514 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04136 Vifa-Chr1 637158012 637162111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04136 360 429 RAD5 or RAD16-like Gene Family AT1G50410 67.143 1.36e-20 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04136 K11547 - gmx:100804770 360.147