Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04118 ATGGGCAAGGAATGGAATTGGGTGGGAAAATCATCCAAAAGAAGTGTTAAAGTTGAAGAAAATCATGAAACAACACCTAGTGGATGCATGTGTGCTGTTTTTCAGTTCTTTGATTTTCATCATTTTTCTAACTCAATAAACCATCAACAACAAATCACTTTCAAATCACCTTCTTCAACTACTATAGTCCCAAAAGGTGGTGAAGCTCCTAGGAATAGCTTGGAATCTGAGGATAGCATTGTTTCAGGTTCTCTATCAAAAGAAGAAAAGTTTAAAGTTCCAAATATACAAATCAAAACTAAAAGGAGCAATGGTGGAAATTTGACTGATTTGTCCTCAGAAATCAGCACTTCATCATCACCAGGAACAAAGACACCAACTTTGGTAGCAAGATTAATGGGAACCAAACCAAGGAACAGCATTGATGGTAGTGAAATTACAAGAGTACCCTCATCTAGAAAATCAGATTTTGATCAACATAGACTATCTCTTCAAATCAACAAAGCCAATAGTTTTGGTGATGAGGATTTTGAGCTGCCTAGATTGTCATTTTCAAAGAGGAAAGTTGATGAGAATAGTTCTAAAAGTTCAAGTCACTATGCTAAGCAAATTGTGAAACAAGTTAAGGAAAGTGTTGTGAGTAGAAAAGTTGGTCAAGACATTACCAATAATCTCAAAAGCATGCAGGATATCAATATCAAACAAAACACTAGAGTAACCAAGAAGTTACCAAGCAGTGATCAATTACAAGGAAGAGAAGAATTCTTAGGACAGTTAAGAGTCAAGAAATGTCCCAAAGCATCATCATTGAAAGATCCAAACCCTAGTTCATCATCTTCACCAAAGATTAGATTCATTGAAAACAAACACAAGCCAAACACAACAACAAAAACAACATCAAAAAATCAAAACACAAAACCAAAGGCTTGTGCATTGAAACAAGAGCAAGAATCAAAGGACAAGAAACTAGTCTCATCAAATTGCAAGAAAGCTACAAATGAAAAGTTTAGTTCAAGATTCAAAAGGCCTCCACAAACATCAGATATAATCGCTCGGCCAACATCGAATTCTCGAGCAAATGACATCAAAAGTAATACCAAATGCAAGAAAACTCAACCATTGTCAAGCAATCTTGTCAACAACATCAATGCTCTTTCAAATGTTGACTCTGTTAAGACAGAGTCCTCTCCTCTGTCCAACAAAATTCCTCAGAATCAGTCACAGGTATCTGAAACTCAAGACTGCAAACTCCAAAGGTACAAACCAGAATTTCAGTACATTGCAGAAATCATAAACAAACATGTCACAACAACAAAAACAATGTCTTTTCACAAATTGTTCTCTTCAACACACTCACTTGACCCATCAATCTTCAACCTTCTCGAACAAAATTCCGACGATAAAGATCAAAACTTTGGCACAAAAAACCAACTGGGTCAACGTTGGAATCGGAAATTGATGTTTGATTTGGTGGATGAAGTTCTAATGGAGATTTTGAAGCCTAAGAGTAGTGAAAAAAAGCTATGTTTTTTAGATGAGTTTTGTGAGAAGTGGACAGTTATGGAGTTAACAGAGAAAGTTTGGAAAAGGGTTAGGGGATTCCCATGTGCTAAGTGTGAAGTTTTGGATGATATTGATAATTTGATTGAATCAGAAGATATGGAGAAAGTGATCAAGTTTGAAGGTGAAGATGAAAGAGAAGAGTTGGTGAGAGAGATTGAAGGGAACATATTAAACACATTGGTGCATGAAACTATTTTGGTTATGAGTATGTTTGAATGA 1782 0.3569 MGKEWNWVGKSSKRSVKVEENHETTPSGCMCAVFQFFDFHHFSNSINHQQQITFKSPSSTTIVPKGGEAPRNSLESEDSIVSGSLSKEEKFKVPNIQIKTKRSNGGNLTDLSSEISTSSSPGTKTPTLVARLMGTKPRNSIDGSEITRVPSSRKSDFDQHRLSLQINKANSFGDEDFELPRLSFSKRKVDENSSKSSSHYAKQIVKQVKESVVSRKVGQDITNNLKSMQDINIKQNTRVTKKLPSSDQLQGREEFLGQLRVKKCPKASSLKDPNPSSSSSPKIRFIENKHKPNTTTKTTSKNQNTKPKACALKQEQESKDKKLVSSNCKKATNEKFSSRFKRPPQTSDIIARPTSNSRANDIKSNTKCKKTQPLSSNLVNNINALSNVDSVKTESSPLSNKIPQNQSQVSETQDCKLQRYKPEFQYIAEIINKHVTTTKTMSFHKLFSSTHSLDPSIFNLLEQNSDDKDQNFGTKNQLGQRWNRKLMFDLVDEVLMEILKPKSSEKKLCFLDEFCEKWTVMELTEKVWKRVRGFPCAKCEVLDDIDNLIESEDMEKVIKFEGEDEREELVREIEGNILNTLVHETILVMSMFE 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04118 593 MobiDBLite consensus disorder prediction 102 126 - -
Vifa1g04118 593 MobiDBLite consensus disorder prediction 391 410 - -
Vifa1g04118 593 MobiDBLite consensus disorder prediction 292 311 - -
Vifa1g04118 593 MobiDBLite consensus disorder prediction 257 369 - -
Vifa1g04118 593 MobiDBLite consensus disorder prediction 57 81 - -
Vifa1g04118 593 MobiDBLite consensus disorder prediction 102 154 - -
Vifa1g04118 593 PANTHER LOW PROTEIN: M-PHASE INDUCER PHOSPHATASE-LIKE PROTEIN 144 590 - -
Vifa1g04118 593 Pfam Domain of unknown function (DUF4378) 423 584 IPR025486 -
Vifa1g04118 593 MobiDBLite consensus disorder prediction 329 369 - -
Vifa1g04118 593 Pfam DUF761-associated sequence motif 118 134 IPR032795 -
Vifa1g04118 593 MobiDBLite consensus disorder prediction 312 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04118 Vifa-Chr1 634666041 634669275 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04118 95 585 TRM (TON1 Recruiting Motif) Superfamily AT5G62170 28.720 3.75e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04118 - - psat:127130446 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04118 1 634666041 634669275 Vifa1g04118 1 634666041 634669275 ECH
Vifa1g04118 1 634666041 634669275 Vifa3g03004 3 854966471 854968523 PCT