Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04113 ATGGGAAGAGGGAGAGTAGTTTTGGAGAGAATAGAAAATAAGATCAACAGGCAAGTAACATTCTCAAAGAGAAGAAGTGGATTATTGAAGAAAGCTTTTGAGCTTTGTTTGCTATGTGATGCTGAAGTAGCACTTATCATCTTTTCAAGTCGTGGCAAGCTTTTCCAATACAGTAGCACTGATGTTAACAAAATCATTGAAAGGTATCGCCAATGTCGTTACAACAAGTCACAAGCTGGAATTTCGTATGGCCATAATGAATCACAGGATTACTTGAAATTAAAGGCAAAATATGAATCTCTTAACCTAAAACAAAGGCATTTTAATGGTGAAGAACTTGAGGAACTAAACATGAAAGAATTGCAGAGCCTCGAGGAACGACTAGACTTAACTCTCACACAAGCTAGACAGCAACAAATGAAAAAACTCTTGGCACGAGCTGAGGAATTACGTGAAAGGTGCATAACTTGGAGGAGCTCTAACAAAACATTGGAGCCCAAGACAATAGATGAACTCTCAAACCAATTGCACGCAATACAAGCCAATCATTTTGAATAA 558 0.3781 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELCLLCDAEVALIIFSSRGKLFQYSSTDVNKIIERYRQCRYNKSQAGISYGHNESQDYLKLKAKYESLNLKQRHFNGEELEELNMKELQSLEERLDLTLTQARQQQMKKLLARAEELRERCITWRSSNKTLEPKTIDELSNQLHAIQANHFE 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04113 185 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Vifa1g04113 185 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa1g04113 185 Pfam K-box region 86 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g04113 185 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa1g04113 185 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa1g04113 185 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa1g04113 185 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Vifa1g04113 185 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 148 - -
Vifa1g04113 185 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Vifa1g04113 185 FunFam MADS-box transcription factor MADS-MC 13 106 - -
Vifa1g04113 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa1g04113 185 ProSiteProfiles K-box domain profile. 84 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g04113 185 Coils Coil 118 153 - -
Vifa1g04113 185 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04113 Vifa-Chr1 633539528 633549112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04113 1 153 MADS-box Gene Family AT2G45650 54.088 4.24e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa1g04113 K-box 1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04113 K09264 - gmx:100779279 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04113 1 633539528 633549112 Vifa1g04113 1 633539528 633549112 ECH
Vifa3g03009 3 856324092 856325779 Vifa1g04113 1 633539528 633549112 PCT