Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04104 ATGGCTTTTCATCACGACCATCTCTCACACGAAATCAACTTCCAGCCATTCACAGAAGATCAACAGCTAAATCAAAGCCGTGACATGCAAAGGCTACTTCCATTCACCGGCGCCGGAGCTGGATCAGCGCCGAATTGGCTCAACAACGCCGTAAACTTACGGCAACAGAATTTCCTCCACCTGCAACCCGACACATCGCAAAACGACGACGGAAGAGGAATTCACATGATGGAAAAAAACCGAGATCGAAACCGGACGGAAAGCAGCAACATAGAATCAGAAGAGTTATCACAATACAAAGCAGATATTCTTGGACATCCTCTCTACGATCAGCTTCTATCTGCTCACGTCTCATGCTTGCGAATCGCGACGCCGGTTGATCAGCTTCCTCGGATCGACGCACAGCTTCAGCAGTCGCAGCGTGTGGTGGAGAAGTACTCTTCACTTGCTAATGGTGTTGTGGATGAGAAGGAGCTTGATCAATTCATGACGCATTATGTTCTCCTGCTTTGTGCTTTTAAAGAACAATTGCAACAGCATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAATTGGAGCAGTCTCTACAAAGCTTGACTGGTGTATCTCCAGGTGAAGGAACCGGTGCAACAATGTCGGACGATGAAGATGATCAAGCAGAGAGCAATGCAAACTTATACGAAGGAAGCCTTGATGGCGGTGATAGTCTCAGCTTTGGTCCACTAGTTCCTACTGAAAGTGAAAGATCTTTAATGGAACGTGTGAGGCAGGAGTTAAAGCATGAGCTAAAACAGGGTTACAAGAGTAAGATTGTGGACATAAGAGAAGAAATTCTACGCAAGAGAAGAGCGGGAAAGCTCCCTGGTGACACCACCTCCCTTTTGAAAGCTTGGTGGCAGTCACACTCAAAATGGCCTTATCCCACTGAAGAAGACAAAGCAAGGTTGGTCCAAGAAACAGGACTTCAATTAAAGCAAATAAACAACTGGTTCATTAATCAAAGAAAAAGGAATTGGCACACTAATCCCTCATCTTCTACTGGCTCCAAAACCAAGCGCAAGAGTGGCGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA 1110 0.4622 MAFHHDHLSHEINFQPFTEDQQLNQSRDMQRLLPFTGAGAGSAPNWLNNAVNLRQQNFLHLQPDTSQNDDGRGIHMMEKNRDRNRTESSNIESEELSQYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSSLANGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDDQAESNANLYEGSLDGGDSLSFGPLVPTESERSLMERVRQELKHELKQGYKSKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGSKTKRKSGAGETSNQSFM 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04104 369 Pfam KNOX2 domain 154 203 IPR005541 GO:0003677|GO:0005634
Vifa1g04104 369 SMART KNOX2_2 149 204 IPR005541 GO:0003677|GO:0005634
Vifa1g04104 369 ProSiteProfiles ELK domain profile. 261 281 IPR005539 GO:0003677
Vifa1g04104 369 FunFam homeobox protein knotted-1-like 3 isoform X1 282 343 - -
Vifa1g04104 369 SMART KNOX1_2 97 141 IPR005540 GO:0003677|GO:0005634
Vifa1g04104 369 Pfam KNOX1 domain 99 140 IPR005540 GO:0003677|GO:0005634
Vifa1g04104 369 ProSiteProfiles 'Homeobox' domain profile. 281 344 IPR001356 GO:0003677
Vifa1g04104 369 Pfam Homeobox KN domain 301 340 IPR008422 GO:0003677|GO:0006355
Vifa1g04104 369 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 108 349 - -
Vifa1g04104 369 Pfam ELK domain 261 282 IPR005539 GO:0003677
Vifa1g04104 369 MobiDBLite consensus disorder prediction 204 223 - -
Vifa1g04104 369 CDD homeodomain 284 345 IPR001356 GO:0003677
Vifa1g04104 369 MobiDBLite consensus disorder prediction 71 90 - -
Vifa1g04104 369 Gene3D - 287 363 - -
Vifa1g04104 369 SMART ELK_2 261 282 IPR005539 GO:0003677
Vifa1g04104 369 MobiDBLite consensus disorder prediction 62 92 - -
Vifa1g04104 369 SMART HOX_1 283 348 IPR001356 GO:0003677
Vifa1g04104 369 MobiDBLite consensus disorder prediction 338 369 - -
Vifa1g04104 369 SUPERFAMILY Homeodomain-like 283 347 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04104 Vifa-Chr1 631621419 631626156 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04104 97 366 Homeobox Transcription Factor Family AT5G11060 83.577 7.67e-168 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vifa1g04104 KNOX2 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04104 - - gmx:100816347 607.831