Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04100 ATGAGTGCAACAAAAGATGAAGCTCTGAGAGCCATAGAAATTGCTGAGAATAGATTGCAGACTGGTGATTTTGCAGTGGCACTGAAGTTTGCTATGAAAGCTCGACGACTGTTTCCTGATACCCAGAACATTACTCAGATCATTACTATTTGTGAGGTTCACTATGCTTCTCAGAACAAACTCTCTACATCTGATATGAACTGGTATGGAATTCTTCTAACTGATAAATTTTCTAAAGAAGCAATGATAAAGAGACAGTATAAAAAACTTGCACCGCTACTTCATCCTGATAAAAATAAATCTGCTGGAGCAGAGGCCGCTTTCAAGTTGATTGTGGAAGCTAACAGAATATTGAGTAACCCAGCAAAGCGTTCTTTATATCACATGAAGATTAGCCGCCTTGCTGGAATTAAAGCACCTCAGGCTCCATCCTATCACCATAATCTTCACACTTCTTCAACACAAATCCTGCTGGCCACTTGGAACTCAACCTGTAAAATCGCATAA 507 0.3964 MSATKDEALRAIEIAENRLQTGDFAVALKFAMKARRLFPDTQNITQIITICEVHYASQNKLSTSDMNWYGILLTDKFSKEAMIKRQYKKLAPLLHPDKNKSAGAEAAFKLIVEANRILSNPAKRSLYHMKISRLAGIKAPQAPSYHHNLHTSSTQILLATWNSTCKIA 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04100 168 CDD DnaJ 67 120 IPR001623 -
Vifa1g04100 168 SMART dnaj_3 66 123 IPR001623 -
Vifa1g04100 168 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vifa1g04100 168 PRINTS DnaJ domain signature 103 123 IPR001623 -
Vifa1g04100 168 PRINTS DnaJ domain signature 87 102 IPR001623 -
Vifa1g04100 168 PANTHER BNAC03G44070D PROTEIN 1 132 - -
Vifa1g04100 168 Gene3D DnaJ domain 52 147 IPR036869 -
Vifa1g04100 168 SUPERFAMILY Chaperone J-domain 57 130 IPR036869 -
Vifa1g04100 168 Pfam DnaJ domain 67 127 IPR001623 -
Vifa1g04100 168 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04100 Vifa-Chr1 631279922 631280428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04100 2 132 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.577 2.97e-18 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04100 - - mtr:11432260 214.542