Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04099 ATGCATATGATGCTTGCATTACAGGTTGTTGACTATGTCATTGTTGCATTAAGTTCATCTATCCTTAAGTTAATCAATCAGGATTGGGGACATCATGATTCAAGATATTTTGTATGGGTTATTGTTGCAATTGAGAATCCTCAGGATATTATTGTTCAATCTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAATTTGCTCAGTATACTGGTGCTCATGCTATCGCTGAAAGACACATTACTGGAATTTTTACTAATCAGCTTCAAACTTCATTCAGCGAGCCGCGTCTTCTCATCCTCACTGACCCAAGAACTGATCACCAGCCAATTAAAGAAGCAGCTCTTGGGAATATTCCCACAATTGCTTTCTGTGACACTGATTCTCCTATGCGATATGTTGACATTGGAATTACTGCCAACAACATAGAGATAGGTAATTGA 441 0.3878 MHMMLALQVVDYVIVALSSSILKLINQDWGHHDSRYFVWVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAERHITGIFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGITANNIEIGN 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04099 146 Coils Coil 144 146 - -
Vifa1g04099 146 ProSitePatterns Ribosomal protein S2 signature 2. 95 119 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vifa1g04099 146 Pfam Ribosomal protein S2 93 141 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04099 146 SUPERFAMILY Ribosomal protein S2 36 141 IPR023591 -
Vifa1g04099 146 CDD RPS2 39 141 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04099 146 PRINTS Ribosomal protein S2 signature 112 123 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04099 146 PRINTS Ribosomal protein S2 signature 70 87 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04099 146 PRINTS Ribosomal protein S2 signature 133 146 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04099 146 PRINTS Ribosomal protein S2 signature 95 112 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04099 146 Gene3D - 7 145 - -
Vifa1g04099 146 PANTHER 40S RIBOSOMAL PROTEIN SA 40 141 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04099 Vifa-Chr1 631277876 631279548 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04099 40 141 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 90.196 2.76e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04099 K02998 - qsu:112004844 195.282