Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04094 ATGGCGTTTGATCAAAACTCAAGTCCTCGAGATATGCGGCCACCGCCTCCCAACGTAGTCCGATCGGAGGAGCCGCTTGTATTGCCGGTTAGCACGGCGTCTGTTAGGGACAATGGAGCCTCCGGTGGGGTTCCGGTTTATTATCCTGATGGTGGATTGGCTGGAGTGGGATATGGAAATGTGGCTTCTGCTGGTGGTGCTGCTTCTTCCACTTGGTGCATTCGCTCCGGTCTTCCCCATCCCCATCCTCATGCTGCTATGAACCCTACTGTTGGGGTTAGTTTTCCTAGTCGTGTTGCTGGTGGCAATGCTGTTGATATTTCGGGTAGTTTTGTTGCACCTGCTAATGGATATCCTTTGAATTTGGGTAGTTGGGTTACTAGTAATGGTTTGGATAATAATAACCTTCAGAAGAGCCGAGTAATTGTCAATGGTGGTGATCATGCTGCTGCTGCTGGTGTTGGGTTGATTGGCTCTCATTCCAACCCCCCTGCTAGTCAGCGAGTTGATGAAAACGGCGCCGATGATTCGGTTTCGGGGCGCAAAATCAAATTTATGTGCAGTTATGGTGGGAAGATTTTGCCTAGACCTAGTGATGGAATGTTGAGGTATGTTGGTGGGCAGACTAGGATAATAAGTGTTAAGAGAGATGTGAGTTTTAATGATTTGGCACAAAAGATGGTTAATACTTTTGGGCAACCTGTTGTTATCAAATATCAGCTTCCTGGTGAGGATCTTGATGCATTGGTCTCGGTTTCCTGTGCTGATGATCTGGATAATATGATGGAAGAATATGAAAGGTTGATTGAGAGGTCCTCAGATGGTTCTCCAAAGTTAAGGGTCTTTCTGTTTTCTGCTTCGGAATTTGATCCTTCTGGTGTGTTGCAGTTTGTAAATTTACATGATGGTGGGCAGAAATATGTTGAAGCTGTGAATGGAATTGCTGACAGTATTAGTGCCAAGCTCACAAGGAAAGGGAGTATTACAAGTGCATCTTCTACTCAAAATTCTGATTTGGGTGGGATAGAGGTTCCTGATGGTACGAATGCTGCTCAAGTAGATGTTAATGGCCCTCCTATGTCCAGCACTTTATCACCCGACGTGAGTGTTGCTGCATCTTATGACGTTACTACAAACGTTGTGATTTCTGAGCCTGCTGAATCAATATGCCCAGATATTTCTGCAGTTTCATTGGGCATACATGTGGCTAATTCAGGTCCAACTCACACTCTACCTTTCCAGAATGAGGTTGAGGTAGAAAAGTCTCCGCCCACTACTTTATCCCAGCAGCAATTTGGGTCGCAGCAGTCTGGAATGGAAATCCAGCCATCTGCGCCTATGCAGGCTTTCGTTGATCCTCGACAGGAACTTCTGAACCATGCAGATTATGTCCAGATGCCTGCCCACATGGGATTCCCAAGTTCCCAGCTTATAGGTAGGCCTGGAACTATCTACTCTCAGCATCATTTTCATGATCATACTGCTGGTTATGTATCCCCACAGGTAATCCCTGCAGTGCAGATGACAATGGCTCAGCCATCATCTCATGCCGGTATAAGACCTTGTGTTATTCAACCACGACCAGTCATGCAAGGACAACAGATCGGTTTTGAGCAGTATTATGATGAAAATACTCCAGGGCTAAGGATACACCACCCGCTTCTAGCTGAGCAAAGTTACAAAGCATATCCACATCAAGTCCCTTTTGGAGGTAATTATGGCTGGGTTCAGGTTTCTCCATCGGAGCATGTTATTTTTCATGATGGATTGTTACCTCAACAACCGGTAGTGGTGCCTCAAAGAGTGGAGGACTGTTATATGTGTCAGAAAAAACTACCTCATGCACATTCAGATCCAGTGGTACAGGATCAGCGTAGTAGCTGTGCAGGTTTAATTCCCGATTCAATGCCAAGCTACAATAGTCTTCCAGTTGAGGATACTTTAAGACCTCAACCAACAAATAGGATTTTGGTGACTGCACCAATGAAGGAAGGCAATGTTAATGTTGAACAAGCAGTTGGGACTAGACCCAGGGTCATCATAGCTTGTAGTGACACAAGTGGTCTTTCTGTGGAGGCTGAAGGTGAGAGAAACTTTAAAGTGGGTAGGCATGATCATTCCAGAAACGCAGTAGTTATCCCGGAAATAGTGGGAAGAACAGGTGAAAAACAGTTGCCACAGGATGGGCTGACAGGAACAGCCCCACTGTCTTATCTAGATGATTTTGGCAGCCAGCACATGGTGCCAGTTGAAAACTGGGCCAAAGAGGACGTGGCTGTGAATAAGCCTGTTAACGAAATACCTTTAGTTGGTGGCACATCTGCCGAAACTTCTGAGAGTATGGTTCAAGAATCATCAACAGAAAATACTACTGAGCTTGCTGGTACAATTTCAAAAACAGATACTGTGGAGAATTGGATTGCACAGGACCTGCTCAAACATATTGATGGAAAAATGGACAACCTCAAGATAAGCAACCCTGAAACTTTTGTAAATAATGATAATTTTGATTACAATACTCAGCATGCTATAGAGAAGCAAGATTTGGTTATGGATAACAACACTGGCAGGTCAAAATTGATTGCTGAAGGAAATCAAATTAAGATGATGGGTACTCTTCCGAACTCCAATGTAGAAATTTCATACAGTAATAATTCTAGGCAAGTGGAGTACAATGAGGCGGCACACCCGCCCGTTTGGGGCATTCCTGGAGTAAATCCTCAATCTAAGAATGGAGTCCATCAGAAGGATGAAGCTGTTTTATCTTCAATTTCGCAATCTGTTGGGTTTGGACATTTGCAGGATTCTTCGAACTCACTTTTTAGCAATCAGGATCCATGGAATCTACAAGGCACCTACTTTCCACCACCTAGACCTGACAAAGTCGCATCAAAAAAAGAAACCTATTCTTTTATTGACCAGTTTGGTGAGAATTCAGGCAACGGCGGTGAACACAAGCTTGATGATCAATTGGATGGTGGTTTCTGTCAGACATTCAAACAAAATTCAACATTAGAAGAAGCTCGATATGCCAAGGAAGAGCAACAACTTCAAGCTGTTGCTGAAAGTTTAGCTGCATCCGTTCTGCACTCAAGCACTTCAAATCCTGACTTACATGCCCGAGATGTATCCCATCATGAAGACACTGAGGATGGAGATGTTCGAAATAATATACTAAATATACAGTGTAGAGAAAAAACTCAGGATGACAAAAGCAAGCTTTCAGAGAAGGCAAATTTTGGCTTTCCAGCATCAGATGTTGGAGCGTTGCAGATTATAAAGAATAGTGACCTTGAAGAGCTAGTAGAATTGGGATCTGGGACCTTCGGGACTGTGTATCATGGAAAATGGAGAGGCAGTGATGTTGCAATAAAGCGGATTAATGATAGGTGTTTTGCTGGAAAGCCTTCAGAGCAAGAACGCTTGAGATCTGATTTTTGGAATGAGGCAATTAAGCTTGCTGACTTACACCACCCAAATGTGGTAGCTTTCTATGGTGTCGTTCTTGATGGCCCAGGAGGTTCTGTGGCAACAGTAACAGAGTATATGGTTAATGGTTCTCTAAGAAATGCCTTCGAGAAGAATGGGAGGAATGTTGACAAGCGCAAGCGTCTTATGATTGCAATGGATGTGGCCTTTGGTATGGAGTACCTCCATGGAAAAAACATAGTACACTTTGACTTGAAAAGTGACAACTTGCTTGTGAATCTCCGTGATCCACACCGCCCAATATGCAAGGTTGGTGATTTGGGCCTGTCCAAAGTAAAATGCCAGACTCTAATATCCGGTGGTGTTAGAGGAACCCTACCTTGGATGGCACCTGAACTGCTGAATGGGAGTAGTAGCCTTGTTTCAGAAAAGGTTGATGTGTTCTCATTTGGTATTGTCATGTGGGAACTGCTCACTGGAGAAGAGCCATATGCTGATTTGCACTATGGGGCCATCATAGGTGGCATTGTGAGCAACACTCTGCGGCCTCTAGTTCCAGAATCTTGTGATCCAGAATGGAGAGTGGTGATGGAGAGGTGCTGGGCTTCAGAACCATCAGAAAGGCCTTCATTTACAGAGATTGCCAATGATTTACGTTCCATGGCTGCCAAAATCTCCCCCAAAGGACAAAATCAACAACAGCAACCTACTTCATCTCAGACTCAAGTGCAGAAGTAA 4167 0.4428 MAFDQNSSPRDMRPPPPNVVRSEEPLVLPVSTASVRDNGASGGVPVYYPDGGLAGVGYGNVASAGGAASSTWCIRSGLPHPHPHAAMNPTVGVSFPSRVAGGNAVDISGSFVAPANGYPLNLGSWVTSNGLDNNNLQKSRVIVNGGDHAAAAGVGLIGSHSNPPASQRVDENGADDSVSGRKIKFMCSYGGKILPRPSDGMLRYVGGQTRIISVKRDVSFNDLAQKMVNTFGQPVVIKYQLPGEDLDALVSVSCADDLDNMMEEYERLIERSSDGSPKLRVFLFSASEFDPSGVLQFVNLHDGGQKYVEAVNGIADSISAKLTRKGSITSASSTQNSDLGGIEVPDGTNAAQVDVNGPPMSSTLSPDVSVAASYDVTTNVVISEPAESICPDISAVSLGIHVANSGPTHTLPFQNEVEVEKSPPTTLSQQQFGSQQSGMEIQPSAPMQAFVDPRQELLNHADYVQMPAHMGFPSSQLIGRPGTIYSQHHFHDHTAGYVSPQVIPAVQMTMAQPSSHAGIRPCVIQPRPVMQGQQIGFEQYYDENTPGLRIHHPLLAEQSYKAYPHQVPFGGNYGWVQVSPSEHVIFHDGLLPQQPVVVPQRVEDCYMCQKKLPHAHSDPVVQDQRSSCAGLIPDSMPSYNSLPVEDTLRPQPTNRILVTAPMKEGNVNVEQAVGTRPRVIIACSDTSGLSVEAEGERNFKVGRHDHSRNAVVIPEIVGRTGEKQLPQDGLTGTAPLSYLDDFGSQHMVPVENWAKEDVAVNKPVNEIPLVGGTSAETSESMVQESSTENTTELAGTISKTDTVENWIAQDLLKHIDGKMDNLKISNPETFVNNDNFDYNTQHAIEKQDLVMDNNTGRSKLIAEGNQIKMMGTLPNSNVEISYSNNSRQVEYNEAAHPPVWGIPGVNPQSKNGVHQKDEAVLSSISQSVGFGHLQDSSNSLFSNQDPWNLQGTYFPPPRPDKVASKKETYSFIDQFGENSGNGGEHKLDDQLDGGFCQTFKQNSTLEEARYAKEEQQLQAVAESLAASVLHSSTSNPDLHARDVSHHEDTEDGDVRNNILNIQCREKTQDDKSKLSEKANFGFPASDVGALQIIKNSDLEELVELGSGTFGTVYHGKWRGSDVAIKRINDRCFAGKPSEQERLRSDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNAFEKNGRNVDKRKRLMIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGEEPYADLHYGAIIGGIVSNTLRPLVPESCDPEWRVVMERCWASEPSERPSFTEIANDLRSMAAKISPKGQNQQQQPTSSQTQVQK 1388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04094 1388 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1186 1377 - -
Vifa1g04094 1388 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1091 1185 - -
Vifa1g04094 1388 MobiDBLite consensus disorder prediction 325 366 - -
Vifa1g04094 1388 MobiDBLite consensus disorder prediction 1031 1051 - -
Vifa1g04094 1388 ProSiteProfiles Protein kinase domain profile. 1098 1365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04094 1388 CDD STKc_MAP3K-like 1104 1361 - -
Vifa1g04094 1388 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 202 286 - -
Vifa1g04094 1388 MobiDBLite consensus disorder prediction 325 342 - -
Vifa1g04094 1388 PRINTS Tyrosine kinase catalytic domain signature 1180 1193 IPR001245 GO:0004672|GO:0006468
Vifa1g04094 1388 PRINTS Tyrosine kinase catalytic domain signature 1332 1354 IPR001245 GO:0004672|GO:0006468
Vifa1g04094 1388 PRINTS Tyrosine kinase catalytic domain signature 1217 1235 IPR001245 GO:0004672|GO:0006468
Vifa1g04094 1388 PRINTS Tyrosine kinase catalytic domain signature 1288 1310 IPR001245 GO:0004672|GO:0006468
Vifa1g04094 1388 Gene3D - 203 286 - -
Vifa1g04094 1388 Pfam PB1 domain 202 284 IPR000270 GO:0005515
Vifa1g04094 1388 SMART serkin_6 1098 1367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04094 1388 Pfam Protein tyrosine and serine/threonine kinase 1102 1361 IPR001245 GO:0004672|GO:0006468
Vifa1g04094 1388 Gene3D Transferase(Phosphotransferase) domain 1 1186 1388 - -
Vifa1g04094 1388 MobiDBLite consensus disorder prediction 1365 1388 - -
Vifa1g04094 1388 ProSitePatterns Protein kinases ATP-binding region signature. 1104 1135 IPR017441 GO:0005524
Vifa1g04094 1388 SUPERFAMILY CAD & PB1 domains 198 289 - -
Vifa1g04094 1388 CDD PB1_UP2 186 284 - -
Vifa1g04094 1388 PANTHER SERINE-THREONINE PROTEIN KINASE 240 1363 - -
Vifa1g04094 1388 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g04094 1388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1223 1235 IPR008271 GO:0004672|GO:0006468
Vifa1g04094 1388 SUPERFAMILY Protein kinase-like (PK-like) 1091 1361 IPR011009 -
Vifa1g04094 1388 SMART PB1_new 197 286 IPR000270 GO:0005515
Vifa1g04094 1388 Gene3D Phosphorylase Kinase; domain 1 1091 1185 - -
Vifa1g04094 1388 MobiDBLite consensus disorder prediction 1368 1388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04094 Vifa-Chr1 630352402 630361037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04094 182 656 MAP Kinase Kinase Kinase AT3G46920 40.825 5.08e-84 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vifa1g04094 PK_Tyr_Ser-Thr 1.7e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04094 - - gmx:100776264 1830.45